> Scaffold attachment factor B (SAFB)
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UGID:4540403     UniGene Hs.728802     Homo sapiens (human)   SAFB Order cDNA clone, Links
Scaffold attachment factor B (SAFB)

Human protein-coding gene SAFB. Represented by 1006 ESTs from 302 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 4540403 - Hs.728802]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001188267.1 SAFB gene product H. sapiens 100.0 916
XP_001142439.3 PREDICTED: scaffold attachment factor B1 isoform 1 P. troglodytes 99.9 915
XP_001085118.2 PREDICTED: scaffold attachment factor B1 isoform 5 M. mulatta 99.9 914
XP_003914769.1 PREDICTED: scaffold attachment factor B1 isoform 1 P. anubis 99.9 913
NP_001156772.1 Safb gene product M. musculus 91.6 936
NP_999848.1 safb gene product D. rerio 59.2 844
NP_001089646.1 SAFB-like transcription modulator X. laevis 53.8 543
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_542146.3 PREDICTED: scaffold attachment factor B1 isoform 2 C. lupus familiaris 97.2 915
XP_003480867.1 PREDICTED: scaffold attachment factor B1-like isoform 2 S. scrofa 97.2 915

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; mixed; uncharacterized tissue; placenta; thymus; lung; embryonic tissue; intestine; uterus; heart; nerve; larynx; mouth; eye; prostate; lymph; ovary; kidney; mammary gland; pancreas; thyroid; skin; stomach; ascites; connective tissue; lymph node; liver; bone; muscle; vascular; cervix; spleen; parathyroid; esophagus; blood; bone marrow; trachea; salivary gland; bladder; adrenal gland; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19p13.3-p13.2
UniSTS entry: Chr 19 RH93302
UniSTS entry: Chr 19 WIAF-2223
UniSTS entry: Chr 19 RH47536
UniSTS entry: Chr 19 WI-16093 [Map Viewer]
UniSTS entry: Chr 19 A008W44
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (24)

NM_002967.3 Homo sapiens scaffold attachment factor B (SAFB), transcript variant 3, mRNA PA
AB208780.1 Homo sapiens mRNA for scaffold attachment factor B variant protein P
BC126219.1 Homo sapiens scaffold attachment factor B, mRNA (cDNA clone MGC:161497 IMAGE:8991935), complete cds P
L43631.1 Homo sapiens scaffold attachment factor B (SAF-B) mRNA, partial cds PA
AK290444.1 Homo sapiens cDNA FLJ76656 complete cds, highly similar to Homo sapiens scaffold attachment factor B (SAFB), mRNA PA
AK307970.1 Homo sapiens cDNA, FLJ97918 P
AK095736.1 Homo sapiens cDNA FLJ38417 fis, clone FEBRA2009731, highly similar to Human Hsp27 ERE-TATA-binding protein (HET) mRNA P
BC032055.1 Homo sapiens scaffold attachment factor B, mRNA (cDNA clone IMAGE:3919120) P
BC020309.1 Homo sapiens scaffold attachment factor B, mRNA (cDNA clone IMAGE:4999249) P
BC143939.1 Homo sapiens scaffold attachment factor B, mRNA (cDNA clone MGC:177474 IMAGE:9052457), complete cds P
BC143938.1 Homo sapiens scaffold attachment factor B, mRNA (cDNA clone MGC:177473 IMAGE:9052456), complete cds P
BC143937.1 Homo sapiens scaffold attachment factor B, mRNA (cDNA clone MGC:177472 IMAGE:9052455), complete cds P
AK304474.1 Homo sapiens cDNA FLJ54736 complete cds, highly similar to Scaffold attachment factor B PA
AK299525.1 Homo sapiens cDNA FLJ59404 complete cds, highly similar to Scaffold attachment factor B PA
AK298707.1 Homo sapiens cDNA FLJ54745 complete cds, highly similar to Scaffold attachment factor B P
AK295298.1 Homo sapiens cDNA FLJ59523 complete cds, highly similar to Scaffold attachment factor B P
AK294718.1 Homo sapiens cDNA FLJ56691 complete cds, highly similar to Scaffold attachment factor B P
AK294671.1 Homo sapiens cDNA FLJ54744 complete cds, highly similar to Scaffold attachment factor B P
AK293152.1 Homo sapiens cDNA FLJ59451 complete cds, highly similar to Scaffold attachment factor B PA
NM_001201339.1 Homo sapiens scaffold attachment factor B (SAFB), transcript variant 2, mRNA PA
NM_001201338.1 Homo sapiens scaffold attachment factor B (SAFB), transcript variant 1, mRNA PA
NM_001201340.1 Homo sapiens scaffold attachment factor B (SAFB), transcript variant 4, mRNA PA
NR_037699.1 Homo sapiens scaffold attachment factor B (SAFB), transcript variant 5, non-coding RNA PA
U72355.1 Human Hsp27 ERE-TATA-binding protein (HET) mRNA, complete cds PA

EST sequences (10 of 1006) [Show all sequences]

AA906446.1 Clone IMAGE:1505997 mixed 3' read
AA972569.1 Clone IMAGE:1584737 lung 3' read
R16212.1 Clone IMAGE:53281 brain 3' read A
AA976378.1 Clone IMAGE:1591494 kidney 3' read
AA976605.1 Clone IMAGE:1585270 lung 3' read P
AA885667.1 Clone IMAGE:1500186 lung 3' read P
AA904944.1 Clone IMAGE:1504683 mixed 3' read
AA905037.1 Clone IMAGE:1507317 mixed 3' read P
AI002066.1 Clone IMAGE:1613294 uncharacterized tissue 3' read P
AI001748.1 Clone IMAGE:1619081 testis 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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