Major histocompatibility complex, class I, J (pseudogene) (HLA-J)

NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs

UGID:3880541 UniGene Hs.720762 Homo sapiens (human) HLA-J

Links

Major histocompatibility complex, class I, J (pseudogene) (HLA-J)

Human pseudo gene HLA-J. Represented by 18 ESTs from 15 cDNA libraries. Corresponds to reference sequence NR_024240.1. [UniGene 3880541 - Hs.720762]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
XP_001119340.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: class I histocompatibility antigen, GOGO-OKO alpha chain-like, partial	M. mulatta	82.3	130
NP_002107.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	HLA-A gene product	H. sapiens	77.6	362
XP_003946048.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain-like isoform 4	M. musculus	60.7	242
Other hits (2 of 9) [Show all]		Species	Id(%)	Len(aa)
XP_004023054.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: BOLA class I histocompatibility antigen, alpha chain BL3-7-like	O. aries	75.8	132
NP_001038963.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PATR-E gene product	P. troglodytes	74.7	334

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	brain; lung; mixed; prostate; stomach; trachea; kidney; intestine; epididymis

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	6
Map position:	6p21.31
UniSTS entry:	Chr 6	RH70531	[Map Viewer]
UniSTS entry:	Chr 6	RH66830	[Map Viewer]
UniSTS entry:	Chr 6	STS-M80468

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

BC062324.1	Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:5420082)	PA
BC089454.1	Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:30563285)	PA
BC020891.1	Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:4694038)	PA
NR_024240.1	Homo sapiens major histocompatibility complex, class I, J (pseudogene) (HLA-J), non-coding RNA	PA

EST sequences (10 of 18) [Show all sequences]

BX281507.1	Clone IMAGp998N072413_;_IMAGE:969030	intestine
CF126969.1	Clone IMAGE:30563285	lung	5' read	P
AW664212.1	Clone IMAGE:2971566	mixed	3' read
BE550198.1	Clone IMAGE:3231633	lung	3' read
DA313595.1	Clone BRHIP3003172	brain	5' read
DA093396.1	Clone BRACE3002207	brain	5' read	P
DA291049.1	Clone BRHIP2002549	brain	5' read	P
DA372074.1	Clone BRTHA2002200	brain	5' read	P
DA376804.1	Clone BRTHA2008611	brain	5' read	P
DA878974.1	Clone PROST2017902	prostate	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria