> Syncoilin, intermediate filament protein (SYNC)
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UGID:3349786     UniGene Hs.712631     Homo sapiens (human)   SYNC Links
Syncoilin, intermediate filament protein (SYNC)

Human protein-coding gene SYNC. Represented by 229 ESTs from 145 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 3349786 - Hs.712631]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_110413.2 SYNC gene product H. sapiens 100.0 481
NP_075974.3 Sync gene product M. musculus 84.5 469
Other hits (2 of 14) [Show all]SpeciesId(%)Len(aa)
XP_003308001.1 PREDICTED: LOW QUALITY PROTEIN: syncoilin P. troglodytes 99.2 483
XP_002802340.1 PREDICTED: syncoilin-like isoform 2 M. mulatta 95.4 475

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; ear; skin; mammary gland; stomach; testis; bone; cervix; muscle; uncharacterized tissue; mixed; vascular; lung; intestine; placenta; eye; blood; thyroid; amniotic fluid; pharynx; spleen; uterus; liver; connective tissue; embryonic tissue; kidney; bone marrow; prostate; bladder; heart; pancreas; ovary; mouth; ascites; nerve; pineal gland; lymph node; trachea
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p35.1
UniSTS entry: Chr 1 SHGC-57292
UniSTS entry: Chr 1 SYNCOILIN__5360
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AK024707.1 Homo sapiens cDNA: FLJ21054 fis, clone CAS00538 PA
BC119701.1 Homo sapiens syncoilin, intermediate filament protein, mRNA (cDNA clone IMAGE:40116869), complete cds P
BC119700.1 Homo sapiens syncoilin, intermediate filament protein, mRNA (cDNA clone IMAGE:40116868), complete cds P
NM_030786.2 Homo sapiens syncoilin, intermediate filament protein (SYNC), transcript variant 1, mRNA P
AK297958.1 Homo sapiens cDNA FLJ54475 complete cds, moderately similar to Mus musculus syncoilin (Sync), mRNA P
AK302275.1 Homo sapiens cDNA FLJ53567 complete cds, moderately similar to Mus musculus syncoilin (Sync), mRNA P
NM_001161708.1 Homo sapiens syncoilin, intermediate filament protein (SYNC), transcript variant 2, mRNA P

EST sequences (10 of 229) [Show all sequences]

AA911725.1 Clone IMAGE:1521085 lung 3' read
AA922473.1 Clone IMAGE:1551867 uncharacterized tissue 3' read A
AI039854.1 Clone IMAGE:1664238 skin 3' read A
AI056722.1 Clone IMAGE:1669586 brain 3' read A
AI074110.1 Clone IMAGE:1679115 skin 3' read
AI094728.1 Clone IMAGE:1686181 brain 3' read A
CB045675.1 Clone IMAGE:3218546 intestine 5' read
CB045674.1 Clone IMAGE:3218546 intestine 3' read P
CB051780.1 Clone IMAGE:3289638 uncharacterized tissue 3' read A
CB051781.1 Clone IMAGE:3289638 uncharacterized tissue 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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