> Lysine (K)-specific demethylase 1B (KDM1B)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:3321543     UniGene Hs.709336     Homo sapiens (human)   KDM1B Links
Lysine (K)-specific demethylase 1B (KDM1B)

Human protein-coding gene KDM1B. Represented by 151 ESTs from 94 cDNA libraries. Corresponds to reference sequence NM_153042.3. [UniGene 3321543 - Hs.709336]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_694587.3 KDM1B gene product H. sapiens 100.0 589
XP_518258.3 PREDICTED: lysine-specific histone demethylase 1B P. troglodytes 99.8 589
NP_758466.1 Kdm1b gene product M. musculus 90.7 825
XP_002667472.2 PREDICTED: lysine-specific histone demethylase 1B-like D. rerio 66.5 242
Other hits (2 of 23) [Show all]SpeciesId(%)Len(aa)
XP_003897149.1 PREDICTED: lysine-specific histone demethylase 1B P. anubis 99.5 589
XP_003356580.1 PREDICTED: lysine-specific histone demethylase 1B isoform 2 S. scrofa 97.6 589

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; blood; intestine; uncharacterized tissue; thyroid; lymph node; heart; kidney; embryonic tissue; prostate; liver; ovary; mouth; spleen; placenta; bladder; eye; mixed; mammary gland; pancreas; uterus; muscle; testis; cervix; skin; connective tissue; pineal gland; stomach; lymph; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p22.3
UniSTS entry: Chr 6 SHGC-36399
UniSTS entry: Chr 6 G31479
UniSTS entry: Chr 6 RH103142
UniSTS entry: Chr 6 A009J06 [Map Viewer]
UniSTS entry: Chr 6 G32571
UniSTS entry: Chr 1 D1S1425
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AK125318.1 Homo sapiens cDNA FLJ43328 fis, clone NT2RI3004510 P
CR627410.1 Homo sapiens mRNA; cDNA DKFZp686I0412 (from clone DKFZp686I0412) PA
BC113093.1 Homo sapiens amine oxidase (flavin containing) domain 1, mRNA (cDNA clone IMAGE:40075842), complete cds P
BC126914.1 Homo sapiens cDNA clone IMAGE:40075911 P
AJ420481.1 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1670982 A
AK091217.1 Homo sapiens cDNA FLJ33898 fis, clone CTONG2008014 P
NM_153042.3 Homo sapiens lysine (K)-specific demethylase 1B (KDM1B), mRNA P

EST sequences (10 of 151) [Show all sequences]

AA907342.1 Clone IMAGE:1503678 mixed 3' read
AI094125.1 Clone IMAGE:1688633 mixed 3' read A
AA903359.1 Clone IMAGE:1518130 uncharacterized tissue 3' read A
AI085575.1 Clone IMAGE:1670982 uncharacterized tissue 3' read A
AI146456.1 Clone IMAGE:1707633 heart 3' read A
BX113187.1 Clone IMAGp998L08889_;_IMAGE:383767 pineal gland
CB150515.1 Clone C1SNU17-31-B05 cervix 5' read
AI241406.1 Clone IMAGE:1850403 mixed 3' read A
AI279176.1 Clone IMAGE:1882231 lung 3' read A
AI288643.1 Clone IMAGE:1879395 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help