> Biogenesis of lysosomal organelles complex-1, subunit 6, pallidin (BLOC1S6)
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UGID:132015     UniGene Hs.7037     Homo sapiens (human)   BLOC1S6 Links
Biogenesis of lysosomal organelles complex-1, subunit 6, pallidin (BLOC1S6)

Human protein-coding gene BLOC1S6. Represented by 552 ESTs from 213 cDNA libraries. Corresponds to reference sequence NM_012388.2. [UniGene 132015 - Hs.7037]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001111943.1 PREDICTED: pallidin M. mulatta 100.0 171
XP_003900936.1 PREDICTED: pallidin-like P. anubis 100.0 171
XP_003314757.1 PREDICTED: pallidin isoform 1 P. troglodytes 100.0 171
NP_036520.1 BLOC1S6 gene product H. sapiens 100.0 171
NP_062762.1 Bloc1s6 gene product M. musculus 93.6 171
NP_001089232.1 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin X. laevis 83.5 164
NP_001074166.1 bloc1s6 gene product D. rerio 75.2 125
Other hits (2 of 15) [Show all]SpeciesId(%)Len(aa)
NP_001069793.1 BLOC1S6 gene product B. taurus 98.8 171
XP_002717791.1 PREDICTED: pallidin O. cuniculus 98.3 172

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; skin; prostate; mixed; uterus; bladder; trachea; eye; spleen; lymph; thymus; lymph node; embryonic tissue; bone marrow; placenta; muscle; connective tissue; cervix; lung; tonsil; esophagus; intestine; mammary gland; pancreas; kidney; uncharacterized tissue; liver; mouth; blood; pharynx; vascular; adrenal gland; ovary; heart; salivary gland; thyroid; bone; adipose tissue; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 15
Map position: 15q21.1
UniSTS entry: Chr 15 D15S1094
UniSTS entry: Chr 15 RH11270
UniSTS entry: Chr 15 STS-N35229 [Map Viewer]
UniSTS entry: Chr 15 HUMHM01F10 [Map Viewer]
UniSTS entry: Chr 15 PLD3_2311
UniSTS entry: Chr 1 D11S2442
UniSTS entry: Chr 1 D11S1053
UniSTS entry: Chr 1 D11S3014
UniSTS entry: Chr 1 D11S3076
UniSTS entry: Chr 1 D11S3206
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AF131859.1 Homo sapiens clone 24923 mRNA sequence A
AK128626.1 Homo sapiens cDNA FLJ46785 fis, clone TRACH3028597, weakly similar to Pallidin P
NM_012388.2 Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 6, pallidin (BLOC1S6), mRNA PA
AF080470.1 Homo sapiens pallid mRNA, complete cds P
BC004819.1 Homo sapiens pallidin homolog (mouse), mRNA (cDNA clone MGC:4983 IMAGE:3450397), complete cds PA
AK057545.1 Homo sapiens cDNA FLJ32983 fis, clone THYMU1000016, moderately similar to Homo sapiens pallid mRNA P
AK315581.1 Homo sapiens cDNA, FLJ96657, highly similar to Homo sapiens pallidin homolog (mouse) (PLDN), mRNA P
BC026289.1 Homo sapiens pallidin homolog (mouse), mRNA (cDNA clone IMAGE:4839532), partial cds A
AK091740.1 Homo sapiens cDNA FLJ34421 fis, clone HHDPC2002963 P

EST sequences (10 of 552) [Show all sequences]

R15802.1 Clone IMAGE:53206 brain 3' read A
AI003969.1 Clone IMAGE:1624431 embryonic tissue 3' read A
AI095921.1 Clone IMAGE:1696901 uterus 3' read
AI085225.1 Clone IMAGE:1666012 skin 3' read A
CB066982.1 Clone IMAGE: pancreas 3' read
CB067253.1 Clone IMAGE: pancreas 5' read
R24866.1 Clone IMAGE:34019 brain 5' read
BX107727.1 Clone IMAGp998B24362_;_IMAGE:191543 mixed
AI186668.1 Clone IMAGE:1745449 lung 3' read A
AI267326.1 Clone IMAGE:2035627 brain


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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