> Damage-specific DNA binding protein 2, 48kDa (DDB2)
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UGID:3072946     UniGene Hs.700338     Homo sapiens (human)   DDB2 Order cDNA clone, Links
Damage-specific DNA binding protein 2, 48kDa (DDB2)

Human protein-coding gene DDB2. Represented by 335 ESTs from 189 cDNA libraries. Corresponds to reference sequence NM_000107.2. [UniGene 3072946 - Hs.700338]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001167874.2 PREDICTED: DNA damage-binding protein 2 isoform 5 P. troglodytes 100.0 426
NP_000098.1 DDB2 gene product H. sapiens 100.0 426
XP_001109935.1 PREDICTED: DNA damage-binding protein 2 isoform 5 M. mulatta 99.5 426
XP_003909996.1 PREDICTED: DNA damage-binding protein 2 isoform 1 P. anubis 99.5 426
NP_082395.2 Ddb2 gene product M. musculus 85.0 431
NP_001076530.1 ddb2 gene product D. rerio 53.4 378
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001490775.2 PREDICTED: DNA damage-binding protein 2 isoform 1 E. caballus 92.5 426
XP_003122861.1 PREDICTED: DNA damage-binding protein 2-like S. scrofa 91.6 426

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; lung; uncharacterized tissue; embryonic tissue; thyroid; liver; cervix; thymus; connective tissue; placenta; uterus; skin; ovary; bone marrow; umbilical cord; spleen; mammary gland; heart; esophagus; testis; kidney; stomach; blood; prostate; eye; intestine; tonsil; lymph; pancreas; ascites; lymph node; adrenal gland; pharynx; muscle; bone; larynx; salivary gland; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11p12-p11
UniSTS entry: Chr 11 RH18246 [Map Viewer]
UniSTS entry: Chr 11 RH27445
UniSTS entry: Chr 11 D11S4389 [Map Viewer]
UniSTS entry: Chr 11 RH18008
UniSTS entry: Chr 11 RH79156 [Map Viewer]
UniSTS entry: Chr 11 G54107
UniSTS entry: Chr 11 RH12304
UniSTS entry: D11S3355
UniSTS entry: RH27353
UniSTS entry: Chr 1 D15S1477
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

BT007139.1 Homo sapiens damage-specific DNA binding protein 2, 48kDa mRNA, complete cds P
NM_000107.2 Homo sapiens damage-specific DNA binding protein 2, 48kDa (DDB2), mRNA PA
AB107039.1 Homo sapiens ddb2 mRNA for damage-specific DNA binding protein 2 splicing variant D3, complete cds P
AB107037.1 Homo sapiens ddb2 mRNA for damage-specific DNA binding protein 2 splicing variant D1, complete cds P
U18300.1 Human damage-specific DNA binding protein p48 subunit (DDB2) mRNA, complete cds P
BC000093.2 Homo sapiens damage-specific DNA binding protein 2, 48kDa, mRNA (cDNA clone MGC:1561 IMAGE:3508134), complete cds PA
AK313262.1 Homo sapiens cDNA, FLJ93771, Homo sapiens damage-specific DNA binding protein 2, 48kDa (DDB2),mRNA P

EST sequences (10 of 335) [Show all sequences]

R16815.1 Clone IMAGE:128692 mixed 3' read
AI014886.1 Clone IMAGE:1622481 embryonic tissue 3' read
AI056249.1 Clone IMAGE:1673156 mixed 3' read
AA946763.1 Clone IMAGE:1589780 kidney 3' read A
AI076139.1 Clone IMAGE:1673321 mixed 3' read A
AI082116.1 Clone IMAGE:1677606 mixed 3' read
AI091642.1 Clone IMAGE:1566663 mixed 3' read A
AI097555.1 Clone IMAGE:1685807 brain 3' read PA
AA922084.1 Clone IMAGE:1484120 larynx 3' read A
AI128037.1 Clone IMAGE:1712712 uterus 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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