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UGID:139336     UniGene Hs.69855     Homo sapiens (human)   CSDE1 Order cDNA clone, Links
Cold shock domain containing E1, RNA-binding (CSDE1)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
XP_001111655.1 PREDICTED: upstream of NRAS M. mulatta 100.0 843
NP_001123995.1 upstream of NRAS isoform 3 H. sapiens 100.0 812
XP_533016.1 PREDICTED: similar to Cold shock domain protein E1 (UNR protein) (N-ras upstream gene protein) isoform 5 C. lupus familiaris 99.9 843
XP_001917791.1 PREDICTED: cold shock domain containing E1, RNA-binding isoform 4 E. caballus 99.8 837
NP_446458.1 cold shock domain containing E1, RNA binding R. norvegicus 99.8 797
NP_001091494.1 cold shock domain containing E1, RNA-binding B. taurus 99.7 766
XP_001924396.1 PREDICTED: similar to KIAA0885 protein S. scrofa 99.7 726
XP_001160588.1 PREDICTED: upstream of NRAS P. troglodytes 99.7 852
NP_659150.1 cold shock domain containing E1, RNA binding isoform 1 M. musculus 99.6 797
NP_001090026.1 hypothetical protein LOC735098 X. laevis 90.7 780
XP_708018.3 PREDICTED: similar to upstream of NRAS isoform 5 D. rerio 86.5 768
NP_648226.2 upstream of N-ras, isoform A D. melanogaster 53.7 857

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; embryonic tissue; trachea; uterus; skin; uncharacterized tissue; placenta; muscle; thymus; intestine; kidney; lung; mixed; mouth; eye; mammary gland; prostate; liver; connective tissue; lymph node; stomach; pancreas; vascular; bone marrow; heart; blood; bone; bladder; cervix; spleen; ovary; ascites; thyroid; lymph; larynx; pituitary gland; nerve; pharynx; salivary gland; adrenal gland; parathyroid; esophagus; adipose tissue; tonsil; ganglia; umbilical cord; ear; amniotic fluid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p22
UniSTS entry: Chr 1 SHGC-32741
UniSTS entry: Chr 1 RH64700
UniSTS entry: WI-11939
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (24)

AB020692.1 Homo sapiens mRNA for KIAA0885 protein, partial cds P
AL050150.1 Homo sapiens mRNA; cDNA DKFZp586J0620 (from clone DKFZp586J0620); partial cds PA
AL110192.1 Homo sapiens mRNA; cDNA DKFZp566C233 (from clone DKFZp566C233); partial cds PA
BX648780.1 Homo sapiens mRNA; cDNA DKFZp686O07132 (from clone DKFZp686O07132) PA
BX648561.1 Homo sapiens mRNA; cDNA DKFZp779L1054 (from clone DKFZp779L1054) PA
AK130392.1 Homo sapiens cDNA FLJ26882 fis, clone PRS09202, highly similar to UNR protein P
NM_007158.4 Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1), transcript variant 2, mRNA PA
CR624546.1 full-length cDNA clone CS0DI004YH13 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR604787.1 full-length cDNA clone CS0DF022YG10 of Fetal brain of Homo sapiens (human) P
CR594529.1 full-length cDNA clone CS0DC025YA16 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) P
CR593292.1 full-length cDNA clone CS0DI032YO05 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR749431.1 Homo sapiens mRNA; cDNA DKFZp779B0247 (from clone DKFZp779B0247) PA
CR749378.1 Homo sapiens mRNA; cDNA DKFZp779J1455 (from clone DKFZp779J1455) PA
NM_001007553.1 Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1), transcript variant 1, mRNA P
AK022516.1 Homo sapiens cDNA FLJ12454 fis, clone NT2RM1000555, highly similar to UNR PROTEIN P
AK022528.1 Homo sapiens cDNA FLJ12466 fis, clone NT2RM1000826, highly similar to UNR PROTEIN P
AY049788.1 Homo sapiens NRAS-related protein (UNR) mRNA, complete cds P
BC021692.1 Homo sapiens cold shock domain containing E1, RNA-binding, mRNA (cDNA clone IMAGE:3961444), partial cds PA
AK290146.1 Homo sapiens cDNA FLJ78375 complete cds, highly similar to Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1), transcript variant 1, mRNA P
BC032446.1 Homo sapiens cold shock domain containing E1, RNA-binding, mRNA (cDNA clone MGC:40318 IMAGE:5111213), complete cds PA
NM_001130523.1 Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1), transcript variant 3, mRNA PA
BC017662.1 Homo sapiens cDNA clone IMAGE:3912700, containing frame-shift errors PA
AF077054.1 Homo sapiens unr protein mRNA, complete cds PA
AF070542.1 Homo sapiens clone 24514 unknown mRNA PA

EST sequences (10 of 3773) [Show all sequences]

AA862702.1 Clone IMAGE:1469092 uncharacterized tissue 3' read
AA961792.1 Clone IMAGE:1598410 uncharacterized tissue 3' read PA
AA976961.1 Clone IMAGE:1587498 uncharacterized tissue 3' read A
AA977969.1 Clone IMAGE:1592358 kidney 3' read PA
AA984986.1 Clone IMAGE:1577176 spleen 3' read
AI000731.1 Clone IMAGE:1636959 kidney 3' read
AI016162.1 Clone IMAGE:1622429 embryonic tissue 3' read P
AI018741.1 Clone IMAGE:1638665 testis 3' read PA
AI022487.1 Clone IMAGE:1650254 parathyroid 3' read A
AI022803.1 Clone IMAGE:1650754 parathyroid 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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