| UGID:2750320 UniGene Hs.681002 Homo sapiens (human) COL1A1 |
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Collagen, type I, alpha 1 (COL1A1)
Human protein-coding gene COL1A1. Represented by 381 ESTs from 124 cDNA libraries. [UniGene 2750320 - Hs.681002]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
|
|
Col1a1 gene product |
M. musculus |
98.3 |
176 |
|
|
COL1A1 gene product |
H. sapiens |
87.6 |
176 |
|
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collagen, type I, alpha 1 precursor |
X. laevis |
81.4 |
176 |
|
|
col1a1a gene product |
D. rerio |
79.1 |
176 |
| Other hits (2 of 23) [Show all] | Species | Id(%) | Len(aa) |
|
|
Col1a1 gene product |
R. norvegicus |
96.6 |
176 |
|
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PREDICTED: hypothetical protein LOC574201 |
M. mulatta |
88.1 |
176 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
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EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
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GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
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cDNA Sources: |
bone; pancreas; uterus; ear; stomach; uncharacterized tissue; testis; embryonic tissue; connective tissue; skin; lung; mammary gland; ovary; eye; brain; mouth; mixed; intestine; placenta; kidney; bone marrow; prostate; esophagus; lymph node; spleen; heart; thyroid; amniotic fluid; pharynx; larynx; adrenal gland; muscle; nerve |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (2)
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M32798.1 |
Human alpha-1 collagen type 1 mRNA, 3' end |
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AB032018.1 |
Homo sapiens DFSP fusion mRNA, partial sequence |
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EST sequences (10 of 381) [Show all sequences]
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AA968534.1 |
Clone IMAGE:1592151 |
kidney |
3' read |
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AA987722.1 |
Clone IMAGE:1593961 |
kidney |
3' read |
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AA992231.1 |
Clone IMAGE:1618208 |
testis |
3' read |
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AI085140.1 |
Clone IMAGE:1664056 |
skin |
3' read |
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AI185516.1 |
Clone IMAGE:1742829 |
lung |
3' read |
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AI191457.1 |
Clone IMAGE:1740701 |
lung |
3' read |
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R26704.1 |
Clone IMAGE:133232 |
placenta |
3' read |
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R32368.1 |
Clone IMAGE:135013 |
placenta |
3' read |
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R32820.1 |
Clone IMAGE:135171 |
placenta |
3' read |
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AI274523.1 |
Clone IMAGE:1981157 |
kidney |
3' read |
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Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
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