> Homeobox C9 (HOXC9)
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UGID:2728141     UniGene Hs.658823     Homo sapiens (human)   HOXC9 Order cDNA clone, Links
Homeobox C9 (HOXC9)

Human protein-coding gene HOXC9. Represented by 49 ESTs from 26 cDNA libraries. EST representation biased toward fetus. Corresponds to reference sequence NM_006897.1. [UniGene 2728141 - Hs.658823]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_032298.1 Hoxc9 gene product M. musculus 100.0 259
NP_001094377.1 homeobox protein Hox-C9 R. norvegicus 100.0 259
XP_003906522.1 PREDICTED: homeobox protein Hox-C9 isoform 1 P. anubis 100.0 259
XP_001136545.1 PREDICTED: homeobox protein Hox-C9 isoform 2 P. troglodytes 100.0 259
NP_008828.1 HOXC9 gene product H. sapiens 100.0 259
XP_002704290.1 PREDICTED: homeobox protein Hox-C9 B. taurus 100.0 259
XP_004006331.1 PREDICTED: homeobox protein Hox-C9 O. aries 100.0 259
NP_571603.2 hoxc9a gene product D. rerio 80.8 259
NP_001167514.1 homeobox D9 X. laevis 70.0 272
Other hits (2 of 23) [Show all]SpeciesId(%)Len(aa)
XP_003216779.1 PREDICTED: homeobox protein Hox-C9-like A. carolinensis 91.0 255
XP_423451.2 PREDICTED: homeobox protein Hox-C9 G. gallus 89.7 261

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: fetus [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; intestine; connective tissue; testis; lung; skin; cervix; eye; bone; mouth; stomach; uncharacterized tissue; kidney; liver; brain
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q13.3
UniSTS entry: Chr 12 RH68776 [Map Viewer]
UniSTS entry: Chr 12 SGC35159 [Map Viewer]
UniSTS entry: MARC_44775-44776:1100041323:1
UniSTS entry: Chr 12 Hoxc9
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

BC053894.1 Homo sapiens homeobox C9, mRNA (cDNA clone MGC:61703 IMAGE:6144625), complete cds PA
AK000445.1 Homo sapiens cDNA FLJ20438 fis, clone KAT04696, highly similar to HXC9_MOUSE HOMEOBOX PROTEIN HOX-C9 PA
BC021265.1 Homo sapiens homeobox C9, mRNA (cDNA clone IMAGE:4580771), **** WARNING: chimeric clone **** PA
AK315194.1 Homo sapiens cDNA, FLJ96178, Homo sapiens homeo box C9 (HOXC9), mRNA PA
BC032769.1 Homo sapiens homeobox C9, mRNA (cDNA clone IMAGE:3877189), partial cds PA
NM_006897.1 Homo sapiens homeobox C9 (HOXC9), mRNA PA

EST sequences (10 of 49) [Show all sequences]

AI085613.1 Clone IMAGE:1678080 mixed 3' read
CB125288.1 Clone L5HLK1s1-3-E04 liver 5' read PA
AI332412.1 Clone IMAGE:1932633 mixed 3' read PA
AI333355.1 Clone IMAGE:1931631 mixed 3' read P
AI361560.1 Clone IMAGE:2014862 brain 3' read P
AI367169.1 Clone IMAGE:1935142 mixed 3' read P
AI382771.1 Clone IMAGE:2063235 mixed 3' read
AI580182.1 Clone IMAGE:2151317 mixed 3' read P
AI671260.1 Clone IMAGE:2310866 uncharacterized tissue 3' read A
AI795981.1 Clone IMAGE:2383263 kidney 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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