> Syndecan binding protein (syntenin) 2 (SDCBP2)
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UGID:2726333     UniGene Hs.657015     Homo sapiens (human)   SDCBP2 Order cDNA clone, Links
Syndecan binding protein (syntenin) 2 (SDCBP2)

Human protein-coding gene SDCBP2. Represented by 176 ESTs from 97 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 2726333 - Hs.657015]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_536737.3 SDCBP2 gene product H. sapiens 100.0 291
NP_663510.1 syntenin-2 M. musculus 84.2 291
NP_001079704.1 similar to syndecan binding protein (syntenin) X. laevis 71.2 288
NP_997856.1 sdcbp gene product D. rerio 66.0 297
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_001167866.2 PREDICTED: syntenin-2 isoform 1 P. troglodytes 98.3 291
XP_001112943.1 PREDICTED: syntenin-2 isoform 3 M. mulatta 96.9 291

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: intestine; brain; pancreas; mammary gland; lung; uncharacterized tissue; cervix; testis; nerve; esophagus; thyroid; bladder; ascites; uterus; thymus; stomach; mixed; prostate; eye; pharynx; muscle; kidney; lymph node; liver; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20p13
UniSTS entry: Chr 20 SHGC-37152
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

AF131809.1 Homo sapiens clone 24904 mRNA sequence, complete cds PA
NM_015685.5 Homo sapiens syndecan binding protein (syntenin) 2 (SDCBP2), transcript variant 2, mRNA PA
AF159228.1 Homo sapiens PDZ protein SITAC18 (SITAC18) mRNA, complete cds PA
BC002727.2 Homo sapiens syndecan binding protein (syntenin) 2, mRNA (cDNA clone MGC:3734 IMAGE:3633262), complete cds PA
AJ292244.1 Homo sapiens mRNA for syntenin-2alpha (syntenin-2 gene) P
AJ292245.1 Homo sapiens mRNA for syntenin-2beta (syntenin-2 gene) P
NM_080489.4 Homo sapiens syndecan binding protein (syntenin) 2 (SDCBP2), transcript variant 1, mRNA PA
AK296577.1 Homo sapiens cDNA FLJ58991 complete cds, highly similar to Syntenin-2 P
NM_001199784.1 Homo sapiens syndecan binding protein (syntenin) 2 (SDCBP2), transcript variant 3, mRNA PA
NR_037661.1 Homo sapiens FKBP1A-SDCBP2 readthrough (non-protein coding) (FKBP1A-SDCBP2), non-coding RNA PA

EST sequences (10 of 176) [Show all sequences]

AA903524.1 Clone IMAGE:1517433 uncharacterized tissue 3' read A
AA974946.1 Clone IMAGE:1555478 kidney 3' read A
AI034060.1 Clone IMAGE:1656072 mixed 3' read A
BX115478.1 Clone IMAGp998N03240_;_IMAGE:153794 mammary gland
CB154462.1 Clone B2N807043-27-A12 brain 5' read P
CB154525.1 Clone B2N807043-27-H03 brain 5' read P
CB147569.1 Clone L11SNU354s1-29-D06 liver 5' read P
AA907131.1 Clone IMAGE:1370775 lymph node 3' read A
AI281079.1 Clone IMAGE:1873101 intestine 3' read A
AI346913.1 Clone IMAGE:1927300 intestine 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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