HLA complex group 9 (non-protein coding) (HCG9)

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UGID:2725569 UniGene Hs.656251 Homo sapiens (human) HCG9

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HLA complex group 9 (non-protein coding) (HCG9)

Human miscRNA gene HCG9. Represented by 5 ESTs from 3 cDNA libraries. Corresponds to reference sequence NR_028032.1. [UniGene 2725569 - Hs.656251]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_001129066.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	HLA complex group 9	P. troglodytes	97.4	76

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources.
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	mixed; brain; liver

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	6
	Map position:	6p21.3

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

BC119792.1	Homo sapiens cDNA clone IMAGE:40014313
AK289926.1	Homo sapiens cDNA FLJ76523 complete cds, highly similar to Homo sapiens HLA complex group 9 (HCG9), mRNA	P
X95289.1	H.sapiens mRNA for HCGIX protein	PA
NR_028032.1	Homo sapiens HLA complex group 9 (non-protein coding) (HCG9), non-coding RNA	PA

EST sequences (5)

BX097961.1	Clone IMAGp998A11112_;_IMAGE:120850	mixed		PA
DA293452.1	Clone BRHIP2005630	brain	5' read	P
DW429128.1		liver
T95879.1	Clone IMAGE:120850	mixed	3' read
T95975.1	Clone IMAGE:120850	mixed	5' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria