> Charged multivesicular body protein 1B (CHMP1B)
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UGID:2725562     UniGene Hs.656244     Homo sapiens (human)   CHMP1B Order cDNA clone, Links
Charged multivesicular body protein 1B (CHMP1B)

Human protein-coding gene CHMP1B. Represented by 294 ESTs from 170 cDNA libraries. Corresponds to reference sequence NM_020412.4. [UniGene 2725562 - Hs.656244]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_077152.1 charged multivesicular body protein 1b-1 M. musculus 100.0 198
XP_002800911.1 PREDICTED: charged multivesicular body protein 1b-like M. mulatta 100.0 198
XP_003914193.1 PREDICTED: charged multivesicular body protein 1b P. anubis 100.0 198
XP_003315850.1 PREDICTED: charged multivesicular body protein 1b-like P. troglodytes 100.0 198
NP_065145.2 CHMP1B gene product H. sapiens 100.0 198
XP_003435060.1 PREDICTED: charged multivesicular body protein 1b C. lupus familiaris 100.0 198
XP_002713608.1 PREDICTED: chromatin modifying protein 1B-like O. cuniculus 100.0 198
NP_001103003.1 charged multivesicular body protein 1B R. norvegicus 100.0 195
NP_001014904.1 CHMP1B gene product B. taurus 99.5 198
NP_001079725.1 charged multivesicular body protein 1b X. laevis 95.0 198
NP_956308.1 chmp1b gene product D. rerio 90.5 198
NP_649051.3 Chmp1 D. melanogaster 80.5 200
NP_490974.1 Protein F23C8.6 C. elegans 63.0 203
XP_001691857.1 subunit of the ESCRT-III complex C. reinhardtii 53.1 191
NP_565053.1 SNF7-like protein A. thaliana 51.0 202
NP_012961.3 Did2p S. cerevisiae 45.8 168
Other hits (2 of 52) [Show all]SpeciesId(%)Len(aa)
XP_003208330.1 PREDICTED: charged multivesicular body protein 1b-like isoform 1 M. gallopavo 98.5 198
XP_002188676.1 PREDICTED: chromatin modifying protein 1B, partial T. guttata 98.4 187

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uterus; blood; adipose tissue; liver; placenta; muscle; embryonic tissue; pancreas; eye; uncharacterized tissue; intestine; lung; mixed; kidney; pituitary gland; skin; ear; stomach; thymus; prostate; lymph; bone; bladder; testis; ovary; lymph node; mammary gland; thyroid; bone marrow; connective tissue; mouth; vascular; heart; larynx; nerve; ganglia; umbilical cord; cervix; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 18
Map position: 18p11.21
UniSTS entry: Chr 18 RH104461
UniSTS entry: Chr 1 G35510
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

BC065933.1 Homo sapiens chromatin modifying protein 1B, mRNA (cDNA clone MGC:74953 IMAGE:6165059), complete cds PA
NM_020412.4 Homo sapiens charged multivesicular body protein 1B (CHMP1B), mRNA P
AF281064.1 Homo sapiens CHMP1.5 mRNA, complete cds P
BC012733.2 Homo sapiens chromatin modifying protein 1B, mRNA (cDNA clone MGC:15076 IMAGE:3928338), complete cds PA
AK314068.1 Homo sapiens cDNA, FLJ94734, Homo sapiens CHMP1.5 protein (CHMP1.5), mRNA P
AJ227887.1 Homo sapiens partial mRNA; ID ED106-4B

EST sequences (10 of 294) [Show all sequences]

AI094439.1 Clone IMAGE:1634786 mixed 3' read A
CB069628.1 Clone IMAGE:6553426 pancreas 3' read A
CB070114.1 Clone IMAGE:6553426 pancreas 5' read P
R28552.1 Clone IMAGE:133989 placenta 5' read
CB120508.1 Clone L8SCK0-35-D12 liver 5' read
CB153462.1 Clone B1T694954-28-F12 brain 5' read
CB127420.1 Clone C1SNU17-19-G11 cervix 5' read
CB130551.1 Clone L12JSHC0-9-D01 liver 5' read
AI276791.1 Clone IMAGE:1873417 intestine 3' read A
AI278326.1 Clone IMAGE:1878980 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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