> Cadherin-related 23 (CDH23)
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UGID:2725350     UniGene Hs.656032     Homo sapiens (human)   CDH23 Links
Cadherin-related 23 (CDH23)

Human protein-coding gene CDH23. Represented by 82 ESTs from 51 cDNA libraries. Corresponds to 9 reference sequences (different isoforms). [UniGene 2725350 - Hs.656032]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_071407.4 CDH23 gene product H. sapiens 100.0 3353
NP_075859.2 Cdh23 gene product M. musculus 95.4 3352
NP_999974.1 cdh23 gene product D. rerio 72.3 3346
Other hits (2 of 18) [Show all]SpeciesId(%)Len(aa)
XP_507839.3 PREDICTED: cadherin-23 P. troglodytes 98.5 1421
XP_003903856.1 PREDICTED: cadherin-23 P. anubis 98.5 3353

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: eye; brain; mixed; uncharacterized tissue; pancreas; thymus; lung; connective tissue; intestine; blood; ascites; testis; spleen; bone; bladder
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q22.1
UniSTS entry: Chr 10 RH44693 [Map Viewer]
UniSTS entry: Chr 10 CDH23
UniSTS entry: Cdh23
UniSTS entry: Cdh23
UniSTS entry: Chr 10 RH48031 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (28)

AY358617.1 Homo sapiens clone DNA87656 CDH23 (UNQ1894) mRNA, complete cds P
BC065284.1 Homo sapiens cadherin-like 23, mRNA (cDNA clone IMAGE:6170074), complete cds PA
AL122081.1 Homo sapiens mRNA; cDNA DKFZp434P2350 (from clone DKFZp434P2350); partial cds PA
AY563166.1 Homo sapiens cadherin 23 isoform B2 (CDH23) mRNA, complete cds P
AY563165.1 Homo sapiens cadherin 23 isoform B1 (CDH23) mRNA, complete cds P
AY563162.1 Homo sapiens cadherin 23 isoform C2 (CDH23) mRNA, complete cds P
AY563161.1 Homo sapiens cadherin 23 isoform C1 (CDH23) mRNA, complete cds P
BC108254.1 Homo sapiens cadherin-like 23, mRNA (cDNA clone IMAGE:6152411), complete cds PA
AY010111.2 Homo sapiens cadherin 23 (CDH23) mRNA, complete cds P
AF312024.1 Homo sapiens cadherin related 23 (CDH23) mRNA, complete cds P
AB058715.1 Homo sapiens mRNA for KIAA1812 protein, partial cds P
NM_022124.5 Homo sapiens cadherin-related 23 (CDH23), transcript variant 1, mRNA PA
AB053445.1 Homo sapiens mRNA for KIAA1774 protein, partial cds P
BC139903.1 Homo sapiens cadherin-like 23, mRNA (cDNA clone IMAGE:40147238), complete cds PA
NM_052836.3 Homo sapiens cadherin-related 23 (CDH23), transcript variant 2, mRNA P
AK074160.1 Homo sapiens mRNA for FLJ00233 protein P
BC032581.1 Homo sapiens cadherin-like 23, mRNA (cDNA clone IMAGE:5494086), complete cds PA
AK093818.1 Homo sapiens cDNA FLJ36499 fis, clone THYMU2019197, weakly similar to Homo sapiens FLAMINGO 1 mRNA P
BC011570.1 Homo sapiens cadherin-like 23, mRNA (cDNA clone IMAGE:4558775), complete cds PA
BC136977.1 Homo sapiens cadherin-like 23, mRNA (cDNA clone IMAGE:9020969), complete cds PA
BC136976.1 Homo sapiens cadherin-like 23, mRNA (cDNA clone IMAGE:9020968), complete cds PA
NM_001171936.1 Homo sapiens cadherin-related 23 (CDH23), transcript variant 9, mRNA PA
NM_001171935.1 Homo sapiens cadherin-related 23 (CDH23), transcript variant 8, mRNA PA
NM_001171934.1 Homo sapiens cadherin-related 23 (CDH23), transcript variant 7, mRNA PA
NM_001171933.1 Homo sapiens cadherin-related 23 (CDH23), transcript variant 6, mRNA PA
NM_001171932.1 Homo sapiens cadherin-related 23 (CDH23), transcript variant 5, mRNA PA
NM_001171931.1 Homo sapiens cadherin-related 23 (CDH23), transcript variant 4, mRNA PA
NM_001171930.1 Homo sapiens cadherin-related 23 (CDH23), transcript variant 3, mRNA P

EST sequences (10 of 82) [Show all sequences]

AI052066.1 Clone IMAGE:1652634 mixed 3' read
AA923445.1 Clone IMAGE:1526612 mixed 3' read A
AI150043.1 Clone IMAGE:1751825 testis 3' read
BX114813.1 Clone IMAGp998N213865_;_IMAGE:1526612 mixed PA
BX280626.1 Clone IMAGp998A186224_;_IMAGE:2500505 brain P
AI857976.1 Clone IMAGE:2408036 lung 3' read A
AW007017.1 Clone IMAGE:2500505 brain 3' read P
CD675842.1 Clone fs28h03 eye 5' read P
AW136977.1 Clone IMAGE:2715536 mixed 3' read A
BX645395.1 Clone DKFZp781K1441 uncharacterized tissue 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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