> Smith-Magenis syndrome chromosome region, candidate 7 (SMCR7)
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UGID:2724873     UniGene Hs.655555     Homo sapiens (human)   SMCR7 Order cDNA clone, Links
Smith-Magenis syndrome chromosome region, candidate 7 (SMCR7)

Human protein-coding gene SMCR7. Represented by 160 ESTs from 90 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 2724873 - Hs.655555]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_683684.2 SMCR7 gene product H. sapiens 100.0 464
NP_001009927.1 Smcr7 gene product M. musculus 84.1 453
NP_001070116.2 smcr7b gene product D. rerio 46.5 462
NP_001085509.1 mitochondrial dynamic protein MID49 X. laevis 45.1 459
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_003953167.1 PREDICTED: LOW QUALITY PROTEIN: mitochondrial dynamic protein MID49 P. troglodytes 99.2 478
XP_001095207.1 PREDICTED: Smith-Magenis syndrome chromosomal region candidate gene 7 protein isoform 2 M. mulatta 98.7 453

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; bladder; intestine; eye; mixed; adrenal gland; kidney; blood; stomach; skin; mouth; testis; spleen; placenta; vascular; thymus; prostate; embryonic tissue; uterus; trachea; liver; pancreas; salivary gland; nerve; ovary; lung; muscle; mammary gland; heart; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17p11.2
UniSTS entry: Chr 1 D11S2875
UniSTS entry: Chr 17 SMCR7__6859
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AK128310.1 Homo sapiens cDNA FLJ46451 fis, clone THYMU3019476 P
BC014973.1 Homo sapiens Smith-Magenis syndrome chromosome region, candidate 7, mRNA (cDNA clone MGC:23130 IMAGE:4859126), complete cds PA
AK056165.1 Homo sapiens cDNA FLJ31603 fis, clone NT2RI2002654 P
AF467443.1 Homo sapiens Smith-Magenis syndrome chromosome region candidate 7 protein (SMCR7) mRNA, complete cds PA
NM_139162.3 Homo sapiens Smith-Magenis syndrome chromosome region, candidate 7 (SMCR7), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA PA
NM_148886.1 Homo sapiens Smith-Magenis syndrome chromosome region, candidate 7 (SMCR7), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA PA
NM_001144900.1 Homo sapiens Smith-Magenis syndrome chromosome region, candidate 7 (SMCR7), nuclear gene encoding mitochondrial protein, transcript variant 3, mRNA PA
BC035292.1 Homo sapiens, clone IMAGE:5180214, mRNA A

EST sequences (10 of 160) [Show all sequences]

AJ230798.1 Clone PS14A11 uncharacterized tissue 3' read
AI860704.1 Clone IMAGE:2424965 uterus 3' read A
AI926059.1 Clone IMAGE:2457930 stomach 3' read A
BX327469.1 Clone CS0DJ013YM08 blood 5' read P
BX476475.1 Clone DKFZp686F20186 muscle 5' read A
AW296884.1 Clone IMAGE:2728479 uncharacterized tissue 3' read A
CD636767.1 uncharacterized tissue
CD636768.1 uncharacterized tissue
CD636769.1 uncharacterized tissue P
CD636770.1 uncharacterized tissue P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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