> Scaffold attachment factor B2 (SAFB2)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:2724710     UniGene Hs.655392     Homo sapiens (human)   SAFB2 Order cDNA clone, Links
Scaffold attachment factor B2 (SAFB2)

Human protein-coding gene SAFB2. Represented by 334 ESTs from 185 cDNA libraries. Corresponds to reference sequence NM_014649.2. [UniGene 2724710 - Hs.655392]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_055464.1 SAFB2 gene product H. sapiens 100.0 952
XP_512297.2 PREDICTED: scaffold attachment factor B2 isoform 3 P. troglodytes 99.9 952
XP_003914763.1 PREDICTED: scaffold attachment factor B2 isoform 1 P. anubis 99.6 952
NP_001025150.2 scaffold attachment factor B2 M. musculus 79.6 990
NP_999848.1 safb gene product D. rerio 61.0 843
NP_001089646.1 SAFB-like transcription modulator X. laevis 54.9 515
Other hits (2 of 25) [Show all]SpeciesId(%)Len(aa)
XP_001084042.1 PREDICTED: scaffold attachment factor B2 isoform 3 M. mulatta 99.5 952
XP_533945.2 PREDICTED: scaffold attachment factor B2 isoform 1 C. lupus familiaris 93.8 952

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; eye; kidney; uncharacterized tissue; bone; skin; intestine; lung; bone marrow; thymus; prostate; mixed; mammary gland; mouth; blood; salivary gland; bladder; stomach; pancreas; uterus; esophagus; thyroid; testis; placenta; embryonic tissue; ovary; pituitary gland; spleen; vascular; liver; larynx; muscle; trachea; cervix; lymph; adrenal gland; lymph node; nerve; connective tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19p13.3
UniSTS entry: Chr 19 D19S1086
UniSTS entry: Chr 19 RH80655
UniSTS entry: Chr 19 RH25361
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AK123246.1 Homo sapiens cDNA FLJ41252 fis, clone BRAMY2033316 P
NM_014649.2 Homo sapiens scaffold attachment factor B2 (SAFB2), mRNA PA
BC001216.1 Homo sapiens scaffold attachment factor B2, mRNA (cDNA clone IMAGE:3534777), partial cds PA
D50928.1 Homo sapiens mRNA for KIAA0138 gene, partial cds P
BC025279.1 Homo sapiens scaffold attachment factor B2, mRNA (cDNA clone MGC:39189 IMAGE:5258272), complete cds PA
AK300501.1 Homo sapiens cDNA FLJ57435 complete cds, highly similar to Scaffold attachment factor B2 P
AK296552.1 Homo sapiens cDNA FLJ60631 complete cds, moderately similar to Scaffold attachment factor B2 P
BC014784.1 Homo sapiens scaffold attachment factor B2, mRNA (cDNA clone IMAGE:4215161), partial cds PA

EST sequences (10 of 334) [Show all sequences]

CB046382.1 Clone IMAGE:3252439 kidney 3' read A
AI168419.1 Clone IMAGE:1509350 mixed 3' read P
AI190598.1 Clone IMAGE:1733914 testis 3' read A
AI215785.1 Clone IMAGE:1883786 lung 3' read
CB162445.1 Clone L17N670205n1-14-H09 liver 5' read P
CB117783.1 Clone L4SNU368-32-H10 liver 5' read
AI201716.1 Clone IMAGE:1859345 brain 3' read A
AI223838.1 Clone IMAGE:1858316 mixed 3' read P
AI286078.1 Clone IMAGE:1855125 mixed 3' read A
AA769843.1 Clone 1322031 testis 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help