> Transcribed locus, strongly similar to NP_001032429.1 Eif6 gene product [Rattus norvegicus]
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UGID:2724166     UniGene Hs.654848     Homo sapiens (human)   Links
Transcribed locus, strongly similar to NP_001032429.1 Eif6 gene product [Rattus norvegicus]

Human putative protein-coding gene. Represented by 244 ESTs from 131 cDNA libraries. [UniGene 2724166 - Hs.654848]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003904859.1 PREDICTED: eukaryotic translation initiation factor 6 isoform 1 P. anubis 99.6 244
XP_001164435.1 PREDICTED: eukaryotic translation initiation factor 6 isoform 4 P. troglodytes 99.6 244
NP_852133.1 EIF6 gene product H. sapiens 99.6 244
XP_001098145.1 PREDICTED: eukaryotic translation initiation factor 6-like, partial M. mulatta 99.5 180
NP_001032429.1 Eif6 gene product R. norvegicus 99.2 244
XP_001501586.1 PREDICTED: eukaryotic translation initiation factor 6-like E. caballus 99.2 244
NP_034709.1 Eif6 gene product M. musculus 98.8 244
NP_001083080.1 eukaryotic translation initiation factor 6 X. laevis 93.9 244
NP_957238.1 eif6 gene product D. rerio 92.7 244
NP_659573.1 eIF6 D. melanogaster 83.3 244
NP_015341.1 Tif6p S. cerevisiae 78.2 243
XP_001693606.1 eukaryotic initiation factor C. reinhardtii 77.9 244
XP_959032.1 eukaryotic translation initiation factor 6 N. crassa 77.5 244
NP_191121.1 Translation initiation factor IF6 A. thaliana 76.1 243
NP_493272.1 Protein EIF-6 C. elegans 68.6 245
Other hits (2 of 60) [Show all]SpeciesId(%)Len(aa)
XP_001364668.2 PREDICTED: eukaryotic translation initiation factor 6-like M. domestica 98.8 250
XP_002710830.1 PREDICTED: eukaryotic translation initiation factor 6 O. cuniculus 98.8 250

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; mixed; eye; muscle; bladder; adrenal gland; cervix; kidney; skin; lung; brain; intestine; blood; placenta; lymph node; embryonic tissue; pharynx; bone; uterus; lymph; prostate; testis; tonsil; pancreas; spinal cord; salivary gland; uncharacterized tissue; stomach; mammary gland; bone marrow; thyroid; heart; connective tissue; amniotic fluid; ascites; mouth; ovary; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
UniSTS entry: Chr 20 SHGC-32768 [Map Viewer]
UniSTS entry: Chr 20 REN57102
UniSTS entry: Chr 20 REN57103
UniSTS entry: Chr 20 REN57101
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

EST sequences (10 of 244) [Show all sequences]

AI189464.1 Clone IMAGE:1722545 placenta 3' read
AI191586.1 Clone IMAGE:1733442 testis 3' read
CB107599.1 Clone L3SNU475-18-D06 liver 5' read
CB108665.1 Clone L3SNU475-27-G02 liver 5' read P
CB137887.1 Clone L5HLK1-24-A07 liver 5' read
CB136637.1 Clone L5HLK1-41-D07 liver 5' read P
CB125705.1 Clone L5HLK1s1-29-D02 liver 5' read P
CB116247.1 Clone L6ChoCK0-20-A05 liver 5' read
CB115532.1 Clone L8SCK0-6-B11 liver 5' read P
CB118738.1 Clone L8SCK0-21-E01 liver 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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