> Retinoic acid receptor, alpha (RARA)
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UGID:2723901     UniGene Hs.654583     Homo sapiens (human)   RARA Order cDNA clone, Links
Retinoic acid receptor, alpha (RARA)

Human protein-coding gene RARA. Represented by 289 ESTs from 146 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 2723901 - Hs.654583]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003953076.1 PREDICTED: retinoic acid receptor alpha P. troglodytes 100.0 481
NP_001138773.1 RARA gene product H. sapiens 100.0 461
NP_001014942.2 retinoic acid receptor alpha B. taurus 100.0 461
XP_002808174.1 PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor alpha-like M. mulatta 100.0 456
XP_003913018.1 PREDICTED: retinoic acid receptor alpha P. anubis 100.0 456
NP_001012663.1 RARA gene product C. lupus familiaris 99.8 461
XP_003131522.1 PREDICTED: retinoic acid receptor alpha isoform 2 S. scrofa 99.8 461
XP_002719401.1 PREDICTED: retinoic acid receptor alpha isoform 2 O. cuniculus 99.8 461
XP_004012911.1 PREDICTED: retinoic acid receptor alpha-A-like O. aries 99.6 449
NP_033050.2 Rara gene product M. musculus 99.3 461
NP_001083723.1 retinoic acid receptor, alpha X. laevis 95.1 447
NP_571474.1 rarab gene product D. rerio 92.4 457
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
NP_113716.2 Rara gene product R. norvegicus 99.1 458
XP_001918066.2 PREDICTED: retinoic acid receptor alpha-like isoform 1 E. caballus 98.9 462

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; thymus; trachea; kidney; pancreas; testis; mouth; mammary gland; spleen; heart; esophagus; eye; uterus; mixed; adrenal gland; thyroid; cervix; muscle; blood; bone marrow; lung; vascular; intestine; embryonic tissue; pharynx; liver; prostate; placenta; bone; skin; epididymis; ovary; lymph; stomach; connective tissue; lymph node; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q21
UniSTS entry: Chr 17 RH80640
UniSTS entry: Chr 17 GDB:180970
UniSTS entry: GDB:376702
UniSTS entry: Chr 17 G10521
UniSTS entry: Rara
UniSTS entry: Rara
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (22)

AK130192.1 Homo sapiens cDNA FLJ26682 fis, clone MPG04930, highly similar to Retinoic acid receptor alpha (RAR-alpha) P
AK123052.1 Homo sapiens cDNA FLJ41057 fis, clone TESTI2009812
NM_000964.3 Homo sapiens retinoic acid receptor, alpha (RARA), transcript variant 1, mRNA P
BC071733.1 Homo sapiens retinoic acid receptor, alpha, mRNA (cDNA clone MGC:88071 IMAGE:5217484), complete cds PA
CR457438.1 Homo sapiens full open reading frame cDNA clone RZPDo834D086D for gene RARA, retinoic acid receptor, alpha; complete cds, incl. stopcodon P
S50916.1 PML-RAR fusion gene {fusion transcript} [human, mRNA Partial, 1284 nt] P
NM_001024809.3 Homo sapiens retinoic acid receptor, alpha (RARA), transcript variant 2, mRNA P
BC008727.2 Homo sapiens retinoic acid receptor, alpha, mRNA (cDNA clone MGC:1651 IMAGE:3163891), complete cds PA
EF535849.1 Homo sapiens PML/RARA fusion mRNA, partial sequence
AK292205.1 Homo sapiens cDNA FLJ78006 complete cds, highly similar to Homo sapiens retinoic acid receptor, alpha, mRNA P
AK312564.1 Homo sapiens cDNA, FLJ92939, Homo sapiens retinoic acid receptor, alpha (RARA), mRNA P
AK098172.1 Homo sapiens cDNA FLJ40853 fis, clone TRACH2015486, highly similar to RETINOIC ACID RECEPTOR ALPHA P
AL834159.1 Homo sapiens mRNA; cDNA DKFZp761C0417 (from clone DKFZp761C0417) PA
AK303868.1 Homo sapiens cDNA FLJ61038 complete cds, highly similar to Homo sapiens retinoic acid receptor, alpha (RARA), transcript variant 2, mRNA P
AJ417079.1 Homo sapiens partial mRNA for PML/RARA fusion protein (PML/RARA gene)
FJ487576.1 Homo sapiens retinoic acid receptor alpha isoform 1 deltaBC (RARA) mRNA, complete cds, alternatively spliced P
NM_001145302.2 Homo sapiens retinoic acid receptor, alpha (RARA), transcript variant 4, mRNA PA
NM_001145301.2 Homo sapiens retinoic acid receptor, alpha (RARA), transcript variant 3, mRNA PA
X06538.1 Human mRNA for retinoic acid receptor P
X06614.1 Human mRNA for receptor of retinoic acid P
HQ692827.1 Homo sapiens retinoic acid nuclear receptor alpha variant 2 (NR1B1) mRNA, complete cds P
HQ692826.1 Homo sapiens retinoic acid nuclear receptor alpha variant 1 (NR1B1) mRNA, complete cds P

EST sequences (10 of 289) [Show all sequences]

AI005074.1 Clone IMAGE:1625703 mixed 3' read
AI089363.1 Clone IMAGE:1695425 uterus 3' read A
AI089567.1 Clone IMAGE:1695505 uterus 3' read A
BX116786.1 Clone IMAGp998O18338_;_IMAGE:182633 mammary gland P
AI218536.1 Clone IMAGE:1844625 mixed 3' read
AI276019.1 Clone IMAGE:1990521 uterus 3' read A
AI203431.1 Clone IMAGE:1941910 uncharacterized tissue 3' read A
AI247318.1 Clone IMAGE:2004531 pancreas 3' read A
AI380422.1 Clone IMAGE:2107109 uncharacterized tissue 3' read
R50690.1 Clone IMAGE:153166 mammary gland 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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