> Collagen, type VIII, alpha 1 (COL8A1)
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UGID:2723866     UniGene Hs.654548     Homo sapiens (human)   COL8A1 Order cDNA clone, Links
Collagen, type VIII, alpha 1 (COL8A1)

Human protein-coding gene COL8A1. Represented by 79 ESTs from 50 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 2723866 - Hs.654548]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001841.2 COL8A1 gene product H. sapiens 100.0 743
XP_001141952.1 PREDICTED: collagen alpha-1(VIII) chain isoform 2 P. troglodytes 99.6 743
NP_031765.2 collagen alpha-1(VIII) chain precursor M. musculus 94.6 743
XP_690914.3 PREDICTED: collagen alpha-1(VIII) chain D. rerio 66.8 732
NP_510663.1 Protein LET-2, isoform b C. elegans 47.1 1151
NP_001081258.1 collagen alpha-1(II) chain precursor X. laevis 46.9 1112
NP_723044.1 collagen type IV, isoform A D. melanogaster 45.2 1261
Other hits (2 of 41) [Show all]SpeciesId(%)Len(aa)
XP_002802671.1 PREDICTED: hypothetical protein LOC100423514 M. mulatta 99.5 744
XP_003893901.1 PREDICTED: collagen alpha-1(VIII) chain P. anubis 99.2 743

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: bone; embryonic tissue; mixed; stomach; eye; skin; lung; brain; adipose tissue; muscle; uncharacterized tissue; connective tissue; ovary; intestine; kidney; thyroid; bone marrow; ear; vascular
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q12.3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

BT009917.1 Homo sapiens collagen, type VIII, alpha 1 mRNA, complete cds P
NM_001850.4 Homo sapiens collagen, type VIII, alpha 1 (COL8A1), transcript variant 1, mRNA P
NM_020351.3 Homo sapiens collagen, type VIII, alpha 1 (COL8A1), transcript variant 2, mRNA P
AY550974.1 Homo sapiens cell proliferation-inducing protein 41 mRNA, complete cds P
BC013581.1 Homo sapiens collagen, type VIII, alpha 1, mRNA (cDNA clone MGC:9568 IMAGE:3875911), complete cds PA
X57527.1 Human COL8A1 mRNA for alpha 1(VIII) collagen P

EST sequences (10 of 79) [Show all sequences]

AI084509.1 Clone IMAGE:1662493 mixed 3' read
AI424724.1 Clone IMAGE:2089498 mixed 3' read P
AI752164.1 Clone NHTBC_cn14a09 bone P
AI752219.1 Clone NHTBC_cn14d05 bone P
AI753307.1 Clone HBMSC_cr08c08 bone marrow 3' read A
CB267246.1 adipose tissue 5' read P
CB269463.1 adipose tissue 5' read
BX504907.1 Clone DKFZp686B19187 muscle 5' read P
AW029321.1 Clone IMAGE:2543112 stomach 3' read P
AW068274.1 Clone NHTBC_cn20b01 bone P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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