> S100 calcium binding protein A4 (S100A4)
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UGID:2723762     UniGene Hs.654444     Homo sapiens (human)   S100A4 Order cDNA clone, Links
S100 calcium binding protein A4 (S100A4)

Human protein-coding gene S100A4. Represented by 465 ESTs from 170 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 2723762 - Hs.654444]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001110635.1 PREDICTED: protein S100-A4 isoform 1 M. mulatta 100.0 100
XP_003892716.1 PREDICTED: protein S100-A4-like isoform 1 P. anubis 100.0 100
XP_001138744.1 PREDICTED: protein S100-A4 isoform 1 P. troglodytes 100.0 100
NP_002952.1 S100A4 gene product H. sapiens 100.0 100
XP_001494676.1 PREDICTED: protein S100-A4-like isoform 2 E. caballus 100.0 100
NP_001239534.1 uncharacterized protein LOC100156358 S. scrofa 100.0 100
NP_035441.1 S100a4 gene product M. musculus 95.0 100
Other hits (2 of 9) [Show all]SpeciesId(%)Len(aa)
XP_004002575.1 PREDICTED: protein S100-A4 O. aries 98.0 100
NP_001003161.1 S100A4 gene product C. lupus familiaris 97.0 100

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; mixed; lung; eye; ascites; heart; blood; bone; adipose tissue; uncharacterized tissue; embryonic tissue; prostate; testis; uterus; skin; bone marrow; muscle; connective tissue; intestine; pancreas; mammary gland; ovary; brain; kidney; esophagus; vascular; placenta; thyroid; cervix; stomach; lymph node; amniotic fluid; pharynx; parathyroid; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q21
UniSTS entry: Chr 1 RH11477 [Map Viewer]
UniSTS entry: Chr 1 RH70249 [Map Viewer]
UniSTS entry: Chr 6 D20S1003
UniSTS entry: Chr 17 D2S2663
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

NM_002961.2 Homo sapiens S100 calcium binding protein A4 (S100A4), transcript variant 1, mRNA P
M80563.1 Human CAPL protein mRNA, complete cds P
CR450345.1 Homo sapiens full open reading frame cDNA clone RZPDo834B127D for gene S100A4, S100 calcium binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog); complete cds; without stopcodon P
AY754741.1 Homo sapiens clone HV-19 acute leukemia drug resistance protein mRNA, partial sequence
AY762982.1 Homo sapiens leukemia multidrug resistance associated protein mRNA, partial cds P
NM_019554.2 Homo sapiens S100 calcium binding protein A4 (S100A4), transcript variant 2, mRNA P
BC016300.1 Homo sapiens S100 calcium binding protein A4, mRNA (cDNA clone MGC:13315 IMAGE:4247807), complete cds PA
AK292083.1 Homo sapiens cDNA FLJ76571 complete cds, highly similar to Homo sapiens S100 calcium binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog) (S100A4), transcript variant 1, mRNA PA
BC024974.1 Homo sapiens S100 calcium binding protein A4, mRNA (cDNA clone IMAGE:4520588) PA
BC000838.1 Homo sapiens S100 calcium binding protein A4, mRNA (cDNA clone MGC:5193 IMAGE:3456833), complete cds PA

EST sequences (10 of 465) [Show all sequences]

AA974404.1 Clone IMAGE:1586849 uncharacterized tissue 3' read P
AA988535.1 Clone IMAGE:1602527 lung 3' read A
AA991227.1 Clone IMAGE:1607842 mammary gland 3' read A
AA995049.1 Clone IMAGE:1631556 mammary gland 3' read A
AI031687.1 Clone IMAGE:1650103 parathyroid 3' read PA
AI057298.1 Clone IMAGE:1669701 brain 3' read PA
AA947319.1 Clone IMAGE:1589425 kidney 3' read PA
AI074768.1 Clone IMAGE:1666901 skin 3' read A
AI081093.1 Clone IMAGE:1679897 skin 3' read PA
AI097377.1 Clone IMAGE:1698675 uterus 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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