> Ring finger protein, LIM domain interacting (RLIM)
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UGID:2619710     UniGene Hs.653288     Homo sapiens (human)   RLIM Order cDNA clone, Links
Ring finger protein, LIM domain interacting (RLIM)

Human protein-coding gene RLIM. Represented by 449 ESTs from 238 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 2619710 - Hs.653288]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_057204.2 RLIM gene product H. sapiens 100.0 623
XP_001096367.1 PREDICTED: e3 ubiquitin-protein ligase RLIM M. mulatta 99.8 623
XP_003917944.1 PREDICTED: E3 ubiquitin-protein ligase RLIM-like P. anubis 99.8 623
XP_001141975.1 PREDICTED: E3 ubiquitin-protein ligase RLIM isoform 1 P. troglodytes 99.5 619
NP_035406.3 Rlim gene product M. musculus 92.3 599
NP_001082725.1 E3 ubiquitin-protein ligase RNF12-A X. laevis 78.3 621
XP_686027.3 PREDICTED: e3 ubiquitin-protein ligase RNF12-A-like isoform 1 D. rerio 68.2 631
Other hits (2 of 29) [Show all]SpeciesId(%)Len(aa)
XP_859444.2 PREDICTED: E3 ubiquitin-protein ligase RLIM isoform 3 C. lupus familiaris 98.1 624
XP_001505027.1 PREDICTED: e3 ubiquitin-protein ligase RLIM isoform 1 E. caballus 97.6 615

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; uterus; embryonic tissue; eye; testis; amniotic fluid; connective tissue; spleen; ovary; placenta; mixed; mammary gland; kidney; muscle; skin; blood; stomach; lung; ear; intestine; heart; adrenal gland; larynx; prostate; bladder; liver; lymph node; vascular; pancreas; thymus; pituitary gland; bone marrow; mouth; trachea; thyroid; lymph; ascites; ganglia; bone; umbilical cord; tonsil
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: Xq13-q21
UniSTS entry: Chr 8 D13S1095E
UniSTS entry: Chr X WI-15437 [Map Viewer]
UniSTS entry: Chr X G20696
UniSTS entry: Chr X A006C14 [Map Viewer]
UniSTS entry: Chr X DXS8342
UniSTS entry: Chr 1 D1S1425
UniSTS entry: Chr 1 D10S16
UniSTS entry: Chr 1 L17877
UniSTS entry: Chr 1 PMC156606P2
UniSTS entry: Chr 15 RNF12_3823
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

BX648613.1 Homo sapiens mRNA; cDNA DKFZp686N06224 (from clone DKFZp686N06224) A
NM_183353.2 Homo sapiens ring finger protein, LIM domain interacting (RLIM), transcript variant 2, mRNA P
AK127880.1 Homo sapiens cDNA FLJ45986 fis, clone PUAEN2000594 PA
AK124877.1 Homo sapiens cDNA FLJ42887 fis, clone BRHIP3007834 A
AK123088.1 Homo sapiens cDNA FLJ41093 fis, clone ASTRO2005423 A
AK001334.1 Homo sapiens cDNA FLJ10472 fis, clone NT2RP2000054 P
NM_016120.3 Homo sapiens ring finger protein, LIM domain interacting (RLIM), transcript variant 1, mRNA P
AF155109.1 Homo sapiens putative ring zinc finger protein NY-REN-43 antigen mRNA, complete cds P
BC013357.2 Homo sapiens ring finger protein, LIM domain interacting, mRNA (cDNA clone MGC:15161 IMAGE:3834870), complete cds PA
AK314760.1 Homo sapiens cDNA, FLJ95628, Homo sapiens ring finger protein 12 (RNF12), mRNA P
AK098789.1 Homo sapiens cDNA FLJ25923 fis, clone CBR05077 A
AF086467.1 Homo sapiens full length insert cDNA clone ZD86G12 A

EST sequences (10 of 449) [Show all sequences]

R19081.1 Clone IMAGE:27023 brain 5' read
AI078733.1 Clone IMAGE:1659837 embryonic tissue 3' read A
AI090781.1 Clone IMAGE:1691676 heart 3' read A
AI092972.1 Clone IMAGE:1692420 heart 3' read A
AA923374.1 Clone IMAGE:1526534 mixed 3' read A
BX111253.1 Clone IMAGp998M052584_;_IMAGE:1034668 embryonic tissue
BX116090.1 Clone IMAGp998K16440_;_IMAGE:221703 eye
BX092273.1 Clone IMAGp998H19123_;_IMAGE:125250 mixed P
AI261525.1 Clone IMAGE:1871244 intestine 3' read A
AI278036.1 Clone IMAGE:1892358 placenta 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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