> Scavenger receptor class F, member 1 (SCARF1)
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UGID:2478054     UniGene Hs.647430     Homo sapiens (human)   SCARF1 Order cDNA clone, Links
Scavenger receptor class F, member 1 (SCARF1)

Human protein-coding gene SCARF1. Represented by 36 ESTs from 30 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 2478054 - Hs.647430]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_003684.2 scavenger receptor class F member 1 isoform 1 precursor H. sapiens 100.0 829
NP_001004157.2 scavenger receptor class F member 1 precursor M. musculus 76.4 818
XP_001344375.2 PREDICTED: endothelial cells scavenger receptor-like D. rerio 52.3 579
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_003954499.1 PREDICTED: LOW QUALITY PROTEIN: scavenger receptor class F member 1, partial P. troglodytes 94.7 472
XP_001117324.1 PREDICTED: endothelial cells scavenger receptor M. mulatta 94.2 548

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lung; uncharacterized tissue; mammary gland; brain; placenta; uterus; kidney; vascular; stomach; testis; intestine; connective tissue; spleen; prostate; blood; ear; nerve; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17p13.3
UniSTS entry: Chr 1 D11S2921
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

NM_145352.2 Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 5, mRNA P
NM_145350.1 Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 3, mRNA PA
NM_003693.2 Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 1, mRNA PA
AK291810.1 Homo sapiens cDNA FLJ78719 complete cds, highly similar to Homo sapiens scavenger receptor class F, member 1, transcript variant 1, mRNA P
D63483.1 Homo sapiens mRNA for KIAA0149 gene, complete cds P
AK308904.1 Homo sapiens cDNA, FLJ98945 P
AK311370.1 Homo sapiens cDNA, FLJ18412 P
AK310174.1 Homo sapiens cDNA, FLJ17216 P
AB052950.1 Homo sapiens SREC mRNA for SREC-5, complete cds P
AB052949.1 Homo sapiens SREC mRNA for SREC-4, complete cds P
AB052948.1 Homo sapiens SREC mRNA for SREC-3, complete cds P
AB052947.1 Homo sapiens SREC mRNA for SREC-2, complete cds P
AK298737.1 Homo sapiens cDNA FLJ51041 complete cds, highly similar to Endothelial cells scavenger receptor precursor P
NR_028076.1 Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 4, non-coding RNA PA
NR_028075.1 Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 2, non-coding RNA PA
BC039735.1 Homo sapiens scavenger receptor class F, member 1, mRNA (cDNA clone MGC:47738 IMAGE:6041360), complete cds PA
D86864.1 Homo sapiens mRNA for acetyl LDL receptor, complete cds P

EST sequences (10 of 36) [Show all sequences]

BX107630.1 Clone IMAGp998A215590_;_IMAGE:2258204 stomach A
AI623132.1 Clone IMAGE:2258204 stomach 3' read A
AI689097.1 Clone IMAGE:2276032 uterus 3' read A
AI690686.1 Clone IMAGE:2276634 uterus 3' read A
AL046076.1 Clone DKFZp434G1572 testis 5' read P
CB994867.1 Clone IMAGE:30339051 placenta 5' read P
BX424073.2 Clone CS0DE003YA07 placenta 5' read P
BX418466.2 Clone CS0DF005YM04 brain 5' read P
CF594207.1 Clone IMAGE:30527922 placenta 5' read P
AW263037.1 Clone IMAGE:2695676 kidney 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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