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SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (SMARCD3)
Human protein-coding gene SMARCD3. Represented by 296 ESTs from 130 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 2477691 - Hs.647067]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
|
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Smarcd3 gene product |
M. musculus |
100.0 |
482 |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3-like isoform 5 |
M. mulatta |
100.0 |
482 |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 |
P. troglodytes |
100.0 |
482 |
|
|
SMARCD3 gene product |
H. sapiens |
100.0 |
482 |
|
|
SMARCD3 gene product |
B. taurus |
100.0 |
482 |
|
|
PREDICTED: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3-like |
O. cuniculus |
100.0 |
482 |
|
|
Smarcd3 gene product |
R. norvegicus |
100.0 |
469 |
|
|
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 |
E. caballus |
100.0 |
388 |
|
|
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 |
M. domestica |
99.8 |
482 |
|
|
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform 3 |
C. lupus familiaris |
99.8 |
482 |
|
|
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 |
S. scrofa |
99.6 |
482 |
|
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smarcd3b gene product |
D. rerio |
92.9 |
475 |
|
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SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 |
X. laevis |
81.7 |
492 |
|
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brahma associated protein 60kD |
D. melanogaster |
72.1 |
495 |
|
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Protein HAM-3 |
C. elegans |
63.6 |
445 |
| Other hits (2 of 29) [Show all] | Species | Id(%) | Len(aa) |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 |
P. anubis |
99.2 |
490 |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 |
O. aries |
98.6 |
432 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
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EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
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GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
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cDNA Sources: |
brain; heart; uterus; mammary gland; embryonic tissue; bladder; liver; thyroid; pancreas; blood; ascites; stomach; testis; adipose tissue; adrenal gland; eye; kidney; ovary; lymph; muscle; uncharacterized tissue; mixed; lung; placenta; prostate; intestine; thymus; nerve; bone; connective tissue; salivary gland; parathyroid; amniotic fluid; pituitary gland |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (13)
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BX648385.1 |
Homo sapiens mRNA; cDNA DKFZp686H22205 (from clone DKFZp686H22205) |
PA |
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AK127595.1 |
Homo sapiens cDNA FLJ45690 fis, clone FCBBF5000384, highly similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily Dmember 3 |
P |
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NM_003078.3 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (SMARCD3), transcript variant 2, mRNA |
PA |
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AY450431.1 |
Homo sapiens 60kDa BRG-1/Brm associated factor subunit c isoform 1 (SMARCD3) mRNA, complete cds |
PA |
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AY450430.1 |
Homo sapiens 60kDa BRG-1/Brm associated factor subunit c isoform 2 (SMARCD3) mRNA, complete cds |
PA |
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NM_001003802.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (SMARCD3), transcript variant 1, mRNA |
PA |
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NM_001003801.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 (SMARCD3), transcript variant 3, mRNA |
PA |
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BC110350.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, mRNA (cDNA clone MGC:111010 IMAGE:5212363), complete cds |
PA |
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BC002628.2 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, mRNA (cDNA clone MGC:3653 IMAGE:3608512), complete cds |
PA |
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AK309500.1 |
Homo sapiens cDNA, FLJ99541 |
P |
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U66619.1 |
Human SWI/SNF complex 60 KDa subunit (BAF60c) mRNA, complete cds |
P |
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AK316173.1 |
Homo sapiens cDNA, FLJ79072 complete cds, highly similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 |
P |
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AK297876.1 |
Homo sapiens cDNA FLJ52707 complete cds, highly similar to SWI/SNF-related matrix-associatedactin-dependent regulator of chromatin subfamily D member 3 |
P |
EST sequences (10 of 296) [Show all sequences]
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AA864449.1 |
Clone IMAGE:1456555 |
kidney |
3' read |
PA |
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AA902273.1 |
Clone IMAGE:1519229 |
uncharacterized tissue |
3' read |
PA |
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AI027477.1 |
Clone IMAGE:1668852 |
brain |
3' read |
P |
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AI039646.1 |
Clone IMAGE:1659966 |
embryonic tissue |
3' read |
P |
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AA864341.1 |
Clone IMAGE:1470687 |
uncharacterized tissue |
3' read |
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AI091285.1 |
Clone IMAGE:1651400 |
mixed |
3' read |
PA |
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CB045063.1 |
Clone IMAGE:3217927 |
intestine |
3' read |
PA |
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CB045064.1 |
Clone IMAGE:3217927 |
intestine |
5' read |
P |
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CB050205.1 |
Clone IMAGE:3271872 |
prostate |
3' read |
PA |
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AI150559.1 |
Clone IMAGE:1752647 |
testis |
3' read |
P |
Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
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