> KRR1, small subunit (SSU) processome component, homolog (yeast) (KRR1)
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UGID:2394594     UniGene Hs.645517     Homo sapiens (human)   KRR1 Order cDNA clone, Links
KRR1, small subunit (SSU) processome component, homolog (yeast) (KRR1)

Human protein-coding gene KRR1. Represented by 232 ESTs from 139 cDNA libraries. Corresponds to reference sequence NM_007043.6. [UniGene 2394594 - Hs.645517]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_008974.5 KRR1 gene product H. sapiens 100.0 380
XP_003952293.1 PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome component homolog P. troglodytes 99.7 380
NP_848725.2 KRR1 small subunit processome component homolog M. musculus 97.4 379
NP_001084288.1 KRR1, small subunit (SSU) processome component, homolog X. laevis 88.7 370
NP_001038790.2 krr1 gene product D. rerio 86.4 375
NP_009872.1 Krr1p S. cerevisiae 71.9 295
NP_477240.1 dribble D. melanogaster 69.7 343
XP_962180.1 90S preribosome/SSU processome component KRR1 N. crassa 68.2 314
XP_001690845.1 predicted protein C. reinhardtii 65.7 305
NP_196459.1 RNA-binding KH domain-containing protein A. thaliana 65.1 381
NP_504837.1 Protein C05C8.2 C. elegans 63.0 364
Other hits (2 of 57) [Show all]SpeciesId(%)Len(aa)
XP_001117587.1 PREDICTED: KRR1 small subunit processome component homolog isoform 1 M. mulatta 99.5 380
XP_003906847.1 PREDICTED: KRR1 small subunit processome component homolog P. anubis 98.7 380

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lung; brain; embryonic tissue; pancreas; uncharacterized tissue; bladder; mammary gland; intestine; bone marrow; liver; vascular; connective tissue; heart; testis; blood; placenta; mixed; pituitary gland; kidney; skin; pineal gland; thymus; uterus; salivary gland; lymph; prostate; lymph node; bone; muscle; adrenal gland; eye; parathyroid; cervix; trachea; ascites; esophagus; stomach; nerve; larynx; thyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q21.2
UniSTS entry: Chr 12 KRR1
UniSTS entry: Chr 13 RH47132 [Map Viewer]
UniSTS entry: Chr 12 SGC32697 [Map Viewer]
UniSTS entry: Chr 12 STS-H56474 [Map Viewer]
UniSTS entry: Chr 12 RH46985
UniSTS entry: Chr 12 RH18004 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

NM_007043.6 Homo sapiens KRR1, small subunit (SSU) processome component, homolog (yeast) (KRR1), mRNA P
EF010919.1 Homo sapiens HRB2 variant B mRNA, complete cds, alternatively spliced P
U55766.1 Human Rev interacting protein Rip-1 mRNA, complete cds PA
BC016778.1 Homo sapiens KRR1, small subunit (SSU) processome component, homolog (yeast), mRNA (cDNA clone MGC:23749 IMAGE:4106298), complete cds PA
AK313687.1 Homo sapiens cDNA, FLJ94276, highly similar to Homo sapiens HIV-1 rev binding protein 2 (HRB2), mRNA P
BC026107.2 Homo sapiens KRR1, small subunit (SSU) processome component, homolog (yeast), mRNA (cDNA clone MGC:33072 IMAGE:4827704), complete cds PA
BC033887.2 Homo sapiens KRR1, small subunit (SSU) processome component, homolog (yeast), mRNA (cDNA clone MGC:33073 IMAGE:5268517), complete cds PA
AK297602.1 Homo sapiens cDNA FLJ57399 complete cds, highly similar to HIV-1 Rev-binding protein 2 P
BC014034.2 Homo sapiens HIV-1 Rev binding protein 2, mRNA (cDNA clone IMAGE:4329064) PA
BC005225.1 Homo sapiens KRR1, small subunit (SSU) processome component, homolog (yeast), mRNA (cDNA clone IMAGE:3685682), partial cds PA

EST sequences (10 of 232) [Show all sequences]

AA992640.1 Clone IMAGE:1623167 embryonic tissue 3' read A
AI051040.1 Clone IMAGE:1649029 parathyroid 3' read A
CB053274.1 Clone IMAGE:3290904 uncharacterized tissue 3' read A
CB161189.1 Clone L18POOL1n1-16-F11 liver 5' read P
CB160246.1 Clone L18POOL1n1-52-E02 liver 5' read P
AA888295.1 Clone IMAGE:1252716 bone
AA897368.1 Clone IMAGE:1466073 mixed 3' read P
AI291443.1 Clone IMAGE:1894401 placenta 3' read A
AI370854.1 Clone IMAGE:2048800 embryonic tissue 3' read A
AI680691.1 Clone IMAGE:2272032 lung 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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