> Cleavage and polyadenylation specific factor 3-like (CPSF3L)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:131868     UniGene Hs.6449     Homo sapiens (human)   CPSF3L Order cDNA clone, Links
Cleavage and polyadenylation specific factor 3-like (CPSF3L)

Human protein-coding gene CPSF3L. Represented by 1009 ESTs from 330 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 131868 - Hs.6449]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001243385.1 CPSF3L gene product H. sapiens 100.0 605
XP_003891002.1 PREDICTED: integrator complex subunit 11 isoform 1 P. anubis 99.8 599
NP_082296.1 Cpsf3l gene product M. musculus 99.0 599
NP_001018457.1 cpsf3l gene product D. rerio 92.1 597
NP_651721.1 integrator 11 D. melanogaster 82.7 594
NP_495706.2 Protein F10B5.8 C. elegans 72.6 558
NP_178282.2 cleavage and polyadenylation specificity factor subunit 3-II A. thaliana 59.3 607
XP_001701679.1 predicted protein C. reinhardtii 52.8 459
NP_001088278.1 cleavage and polyadenylation specific factor 3, 73kDa X. laevis 45.4 216
Other hits (2 of 52) [Show all]SpeciesId(%)Len(aa)
XP_001092173.2 PREDICTED: integrator complex subunit 11 isoform 3 M. mulatta 99.5 578
XP_003639102.1 PREDICTED: integrator complex subunit 11-like C. lupus familiaris 99.3 599

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; uncharacterized tissue; intestine; thymus; kidney; uterus; connective tissue; mammary gland; stomach; skin; placenta; blood; lung; embryonic tissue; prostate; eye; liver; ovary; esophagus; muscle; adrenal gland; ascites; pancreas; mixed; vascular; mouth; lymph; spleen; heart; bone marrow; salivary gland; bone; thyroid; bladder; trachea; adipose tissue; lymph node; cervix; larynx; pituitary gland; pharynx; ganglia; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p36.33
UniSTS entry: Chr 1 D1S2520
UniSTS entry: Chr 1 RH76790
UniSTS entry: Chr 1 D15S1477
UniSTS entry: MARC_12323-12324:1005766258:1
UniSTS entry: Chr 1 D1S1425
UniSTS entry: Chr 1 D8S2279
UniSTS entry: Chr 1 GDB:434012
UniSTS entry: Chr 1 RH36905
UniSTS entry: Chr 1 L17688
UniSTS entry: Chr 1 D17S610
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (24)

BC042444.1 Homo sapiens cleavage and polyadenylation specific factor 3-like, mRNA (cDNA clone IMAGE:5167769), containing frame-shift errors PA
BC047576.1 Homo sapiens cDNA clone IMAGE:4814349, containing frame-shift errors PA
NM_017871.5 Homo sapiens cleavage and polyadenylation specific factor 3-like (CPSF3L), transcript variant 2, mRNA PA
AK000549.1 Homo sapiens cDNA FLJ20542 fis, clone KAT11395 PA
CR533557.1 Homo sapiens full open reading frame cDNA clone RZPDo834G0521D for gene FLJ20542, hypothetical protein FLJ20542; complete cds, incl. stopcodon P
AK021939.1 Homo sapiens cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar to CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD SUBUNIT P
AK022675.1 Homo sapiens cDNA FLJ12613 fis, clone NT2RM4001594 P
AK023356.1 Homo sapiens cDNA FLJ13294 fis, clone OVARC1001232, weakly similar to CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD SUBUNIT P
BC000675.2 Homo sapiens cleavage and polyadenylation specific factor 3-like, mRNA (cDNA clone IMAGE:3349422), partial cds PA
AL136813.1 Homo sapiens mRNA; cDNA DKFZp434A1923 (from clone DKFZp434A1923) PA
BC007978.2 Homo sapiens cleavage and polyadenylation specific factor 3-like, mRNA (cDNA clone MGC:14999 IMAGE:3836956), complete cds PA
AK027767.1 Homo sapiens cDNA FLJ14861 fis, clone PLACE1001729 P
BC008041.2 Homo sapiens cleavage and polyadenylation specific factor 3-like, mRNA (cDNA clone MGC:15050 IMAGE:3831587), complete cds PA
BC013904.2 Homo sapiens cleavage and polyadenylation specific factor 3-like, mRNA (cDNA clone IMAGE:3619747), partial cds PA
AK058018.1 Homo sapiens cDNA FLJ25289 fis, clone STM07125 P
AK056652.1 Homo sapiens cDNA FLJ32090 fis, clone OCBBF2000719, highly similar to Homo sapiens cleavage and polyadenylation specific factor 3-like, transcript variant 1, mRNA P
BC020199.1 Homo sapiens cleavage and polyadenylation specific factor 3-like, mRNA (cDNA clone MGC:31782 IMAGE:4642543), complete cds PA
AK291387.1 Homo sapiens cDNA FLJ77752 complete cds P
AK092190.1 Homo sapiens cDNA FLJ34871 fis, clone NT2NE2014758 P
AK297350.1 Homo sapiens cDNA FLJ55759 complete cds, highly similar to Homo sapiens cleavage and polyadenylation specific factor 3-like, transcript variant 1, mRNA P
NM_001256463.1 Homo sapiens cleavage and polyadenylation specific factor 3-like (CPSF3L), transcript variant 5, mRNA PA
NM_001256460.1 Homo sapiens cleavage and polyadenylation specific factor 3-like (CPSF3L), transcript variant 3, mRNA PA
NM_001256462.1 Homo sapiens cleavage and polyadenylation specific factor 3-like (CPSF3L), transcript variant 4, mRNA PA
NM_001256456.1 Homo sapiens cleavage and polyadenylation specific factor 3-like (CPSF3L), transcript variant 1, mRNA PA

EST sequences (10 of 1009) [Show all sequences]

AA977415.1 Clone IMAGE:1590619 kidney 3' read
AA991426.1 Clone IMAGE:1612722 uncharacterized tissue 3' read
AI016890.1 Clone IMAGE:1627874 mixed 3' read
AI077544.1 Clone IMAGE:1677154 embryonic tissue 3' read
AI089263.1 Clone IMAGE:1695744 uterus 3' read
CB160139.1 Clone L18POOL1n1-49-B11 liver 5' read P
CB108766.1 Clone L5HLK1-1-H04 liver 5' read
CB126894.1 Clone L5HLK1s1-23-B02 liver 5' read P
CB153958.1 Clone B1T694954-27-E06 brain 5' read P
CB148698.1 Clone L15CKK1-43-H10 liver 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help