> Casein kinase 2, alpha 1 polypeptide (CSNK2A1)
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UGID:2225227     UniGene Hs.644056     Homo sapiens (human)   CSNK2A1 Order cDNA clone, Links
Casein kinase 2, alpha 1 polypeptide (CSNK2A1)

Human protein-coding gene CSNK2A1. Represented by 581 ESTs from 245 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 2225227 - Hs.644056]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001112324.1 PREDICTED: casein kinase II subunit alpha-like isoform 3 M. mulatta 100.0 390
XP_003904977.1 PREDICTED: casein kinase II subunit alpha isoform 1 P. anubis 100.0 390
NP_808227.1 CSNK2A1 gene product H. sapiens 100.0 390
XP_850579.1 PREDICTED: casein kinase II subunit alpha isoform 2 C. lupus familiaris 100.0 390
XP_003134407.1 PREDICTED: casein kinase II subunit alpha-like isoform 1 S. scrofa 100.0 390
NP_777060.2 CSNK2A1 gene product B. taurus 100.0 390
XP_004014509.1 PREDICTED: casein kinase II subunit alpha O. aries 100.0 390
NP_001153756.1 CSNK1A1 gene product O. cuniculus 100.0 390
NP_031814.2 Csnk2a1 gene product M. musculus 99.7 390
NP_001084124.1 casein kinase II subunit alpha X. laevis 98.8 400
NP_001002164.1 zgc:86598 gene product D. rerio 96.7 392
NP_524918.1 casein kinase IIalpha, isoform B D. melanogaster 93.9 327
NP_492811.1 Protein KIN-3 C. elegans 87.3 355
NP_179890.1 putative casein kinase II subunit alpha A. thaliana 82.5 321
XP_001701441.1 casein kinase 2 alpha chain, CK2A C. reinhardtii 80.8 328
XP_964983.2 casein kinase II N. crassa 75.2 315
NP_012229.1 Cka1p S. cerevisiae 72.5 360
Other hits (2 of 57) [Show all]SpeciesId(%)Len(aa)
NP_446276.1 Csnk2a1 gene product R. norvegicus 99.5 390
XP_001363602.1 PREDICTED: casein kinase II subunit alpha-like M. domestica 99.5 390

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; uncharacterized tissue; mixed; kidney; liver; mammary gland; lymph node; prostate; embryonic tissue; thymus; lung; esophagus; pancreas; larynx; pituitary gland; bladder; thyroid; mouth; muscle; uterus; intestine; eye; connective tissue; placenta; pharynx; trachea; blood; skin; spleen; ascites; bone; stomach; ovary; vascular; pineal gland; amniotic fluid; heart; cervix; umbilical cord; bone marrow; nerve; adrenal gland; lymph
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20p13
UniSTS entry: Chr 11 WI-16945 [Map Viewer]
UniSTS entry: Chr 11 GDB:197832
UniSTS entry: Chr 20 16.MMHAP54FLF1.seq
UniSTS entry: Chr 11 STS-M78020 [Map Viewer]
UniSTS entry: Chr 20 STS-T29481
UniSTS entry: Chr 11 CSNK2A1
UniSTS entry: RH65533
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

NM_177560.2 Homo sapiens casein kinase 2, alpha 1 polypeptide (CSNK2A1), transcript variant 3, mRNA PA
NM_177559.2 Homo sapiens casein kinase 2, alpha 1 polypeptide (CSNK2A1), transcript variant 1, mRNA PA
BC050036.1 Homo sapiens casein kinase 2, alpha 1 polypeptide, mRNA (cDNA clone MGC:51015 IMAGE:5298655), complete cds PA
BC053532.1 Homo sapiens casein kinase 2, alpha 1 polypeptide, mRNA (cDNA clone MGC:61540 IMAGE:3908058), complete cds PA
NM_001895.3 Homo sapiens casein kinase 2, alpha 1 polypeptide (CSNK2A1), transcript variant 2, mRNA PA
BC071167.1 Homo sapiens casein kinase 2, alpha 1 polypeptide, mRNA (cDNA clone MGC:88038 IMAGE:5772615), complete cds PA
AY735339.1 Homo sapiens casein kinase 2 alpha 1 subunit transcript variant 3, 5' UTR
BT019792.1 Homo sapiens casein kinase 2, alpha 1 polypeptide mRNA, complete cds P
J02853.1 Homo sapiens casein kinase II alpha subunit mRNA, complete cds P
S53149.1 Homo sapiens casein kinase II-alpha subunit mRNA, complete cds P
DQ354583.1 Homo sapiens casein kinase 2 alpha isoform mRNA, complete cds PA
BC011668.2 Homo sapiens casein kinase 2, alpha 1 polypeptide, mRNA (cDNA clone MGC:15232 IMAGE:4121882), complete cds PA
AK312535.1 Homo sapiens cDNA, FLJ92904, highly similar to Homo sapiens casein kinase 2, alpha 1 polypeptide (CSNK2A1), mRNA P
AK302583.1 Homo sapiens cDNA FLJ57289 complete cds, highly similar to Casein kinase II subunit alpha (EC 2.7.11.1) P
AB451411.1 Homo sapiens CSNK2A1 mRNA for casein kinase II alpha 1 subunit isoform a, partial cds, clone: FLJ08116AAAF P
AB451279.1 Homo sapiens CSNK2A1 mRNA for casein kinase II alpha 1 subunit isoform a, complete cds, clone: FLJ08116AAAN P
BC002615.2 Homo sapiens cDNA clone IMAGE:3140817, containing frame-shift errors PA
M55265.1 Human casein kinase II alpha subunit mRNA, complete cds P

EST sequences (10 of 581) [Show all sequences]

AA903032.1 Clone IMAGE:1517468 uncharacterized tissue 3' read A
AA976706.1 Clone IMAGE:1585552 lung 3' read
AA988978.1 Clone IMAGE:1602862 lung 3' read
AA992844.1 Clone IMAGE:1620052 testis 3' read
AA993644.1 Clone IMAGE:1623511 embryonic tissue 3' read A
AI000203.1 Clone IMAGE:1636615 kidney 3' read P
AA885666.1 Clone IMAGE:1500182 lung 3' read
AI014611.1 Clone IMAGE:1628748 mixed 3' read A
AI018081.1 Clone IMAGE:1642156 testis 3' read P
AI025063.1 Clone IMAGE:1639399 testis 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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