> SRY (sex determining region Y)-box 4 (SOX4)
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UGID:2225081     UniGene Hs.643910     Homo sapiens (human)   SOX4 Order cDNA clone, Links
SRY (sex determining region Y)-box 4 (SOX4)

Human protein-coding gene SOX4. Represented by 963 ESTs from 239 cDNA libraries. Corresponds to reference sequence NM_003107.2. [UniGene 2225081 - Hs.643910]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001098923.1 PREDICTED: transcription factor SOX-4 M. mulatta 100.0 474
XP_527244.1 PREDICTED: transcription factor SOX-4 P. troglodytes 100.0 473
NP_003098.1 SOX4 gene product H. sapiens 100.0 473
XP_003897162.1 PREDICTED: transcription factor SOX-4 P. anubis 99.8 414
NP_033264.2 Sox4 gene product M. musculus 94.3 439
NP_001079998.1 SRY (sex determining region Y)-box 4 X. laevis 82.7 386
NP_998287.1 sox4a gene product D. rerio 63.1 357
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
XP_004019388.1 PREDICTED: transcription factor SOX-4 O. aries 98.4 245
XP_003128248.1 PREDICTED: transcription factor SOX-4-like S. scrofa 97.7 476

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; lung; liver; brain; uncharacterized tissue; embryonic tissue; bone marrow; prostate; testis; intestine; eye; heart; ovary; mammary gland; blood; uterus; kidney; skin; pancreas; larynx; stomach; ear; thymus; pituitary gland; lymph node; adipose tissue; muscle; thyroid; pharynx; bladder; epididymis; adrenal gland; nerve; amniotic fluid; placenta; ascites; connective tissue; mouth; parathyroid; bone; vascular; spleen; ganglia; spinal cord
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p22.3
UniSTS entry: Chr 6 RH46888
UniSTS entry: Chr 6 A002M13 [Map Viewer]
UniSTS entry: Chr 6 SGC33328 [Map Viewer]
UniSTS entry: Chr 6 RH79983
UniSTS entry: Chr 6 MARC_10647-10648:1000474126:1
UniSTS entry: Chr 6 PMC123659P3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

NM_003107.2 Homo sapiens SRY (sex determining region Y)-box 4 (SOX4), mRNA PA
BC072668.1 Homo sapiens SRY (sex determining region Y)-box 4, mRNA (cDNA clone MGC:71240 IMAGE:6584346), complete cds PA
AJ420500.1 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1977059 A
AF070669.1 Homo sapiens sox mRNA, partial 5'UTR
AF124147.1 Homo sapiens SOX4 mRNA, 5' untranslated region
X65661.1 H.sapiens Sox-4 mRNA
X70683.1 H.sapiens mRNA for SOX-4 protein P

EST sequences (10 of 963) [Show all sequences]

AA862774.1 Clone IMAGE:1469168 uncharacterized tissue 3' read
AA961520.1 Clone IMAGE:1592529 kidney 3' read
AA922714.1 Clone IMAGE:1474432 intestine 3' read A
AA972184.1 Clone IMAGE:1582826 mixed 3' read A
AA974889.1 Clone IMAGE:1588764 kidney 3' read
AA983433.1 Clone IMAGE:1598827 uncharacterized tissue 3' read PA
AA987215.1 Clone IMAGE:1603316 lung 3' read
AA995463.1 Clone IMAGE:1610404 uncharacterized tissue 3' read
AA995471.1 Clone IMAGE:1610405 uncharacterized tissue 3' read
AA905932.1 Clone IMAGE:1504882 mixed 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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