> Solute carrier family 40 (iron-regulated transporter), member 1 (SLC40A1)
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UGID:2224207     UniGene Hs.643005     Homo sapiens (human)   SLC40A1 Order cDNA clone, Links
Solute carrier family 40 (iron-regulated transporter), member 1 (SLC40A1)

Human protein-coding gene SLC40A1. Represented by 758 ESTs from 211 cDNA libraries. Corresponds to reference sequence NM_014585.5. [UniGene 2224207 - Hs.643005]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001165179.1 PREDICTED: solute carrier family 40 member 1 isoform 3 P. troglodytes 100.0 570
NP_055400.1 SLC40A1 gene product H. sapiens 100.0 570
XP_002808055.1 PREDICTED: LOW QUALITY PROTEIN: solute carrier family 40 member 1-like M. mulatta 99.7 613
NP_058613.2 Slc40a1 gene product M. musculus 96.0 569
NP_001086826.1 solute carrier family 40 (iron-regulated transporter), member 1 X. laevis 85.7 575
NP_571704.1 slc40a1 gene product D. rerio 80.4 545
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_003907770.1 PREDICTED: solute carrier family 40 member 1 P. anubis 99.3 415
XP_535999.2 PREDICTED: solute carrier family 40 member 1 C. lupus familiaris 95.8 575

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uterus; placenta; muscle; uncharacterized tissue; liver; mixed; brain; stomach; thyroid; blood; lung; cervix; testis; parathyroid; connective tissue; pancreas; trachea; spleen; lymph node; heart; kidney; ear; embryonic tissue; adrenal gland; intestine; pharynx; mammary gland; ovary; thymus; skin; eye; bladder; bone marrow; prostate; ascites; bone; vascular; adipose tissue; nerve; spinal cord; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q32
UniSTS entry: Chr 2 A002Q39
UniSTS entry: Chr 2 WI-16551 [Map Viewer]
UniSTS entry: Chr 2 D2S2575 [Map Viewer]
UniSTS entry: Chr 2 STS-AA011593
UniSTS entry: Chr 2 RH36364
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (22)

BX537503.1 Homo sapiens mRNA; cDNA DKFZp779A1311 (from clone DKFZp779A1311) PA
AF171087.1 Homo sapiens MSTP079 (MST079) mRNA, complete cds PA
AK002038.1 Homo sapiens cDNA FLJ11176 fis, clone PLACE1007386 P
AF226614.1 Homo sapiens ferroportin1 (FPN1) mRNA, complete cds P
AF231121.1 Homo sapiens iron-regulated transporter IREG1 (IREG1) mRNA, complete cds P
CR533564.1 Homo sapiens full open reading frame cDNA clone RZPDo834H0721D for gene SLC40A1, solute carrier family 40 (iron-regulated transporter), member 1; complete cds, incl. stopcodon P
NM_014585.5 Homo sapiens solute carrier family 40 (iron-regulated transporter), member 1 (SLC40A1), mRNA P
AF215636.1 Homo sapiens SLC11A3 iron transporter mRNA, complete cds PA
AK223236.1 Homo sapiens mRNA for solute carrier family 40 (iron-regulated transporter), member 1 variant, clone: STM01809 P
DQ065764.1 Homo sapiens putative ferroportin 1 variant IIIC (SLC40A1) mRNA, partial cds
DQ065763.1 Homo sapiens putative ferroportin 1 variant IIIB (SLC40A1) mRNA, partial cds
DQ065762.1 Homo sapiens putative ferroportin 1 variant IIIA (SLC40A1) mRNA, partial cds
DQ065761.1 Homo sapiens ferroportin 1 variant IIB (SLC40A1) mRNA, partial cds
DQ065760.1 Homo sapiens ferroportin 1 variant IIA (SLC40A1) mRNA, partial cds
DQ065759.1 Homo sapiens ferroportin 1 variant I (SLC40A1) mRNA, partial cds
AK023574.1 Homo sapiens cDNA FLJ13512 fis, clone PLACE1005453
AL136944.1 Homo sapiens mRNA; cDNA DKFZp586J0624 (from clone DKFZp586J0624) PA
AK292146.1 Homo sapiens cDNA FLJ78004 complete cds, highly similar to Homo sapiens solute carrier family 40 (iron-regulated transporter), member 1, mRNA P
AK314827.1 Homo sapiens cDNA, FLJ95707, Homo sapiens solute carrier family 11 (proton-coupled divalent metal ion transporters), member 3 (SLC11A3), mRNA P
AF147322.1 Homo sapiens full length insert cDNA clone YB21H04 P
BC037733.1 Homo sapiens solute carrier family 40 (iron-regulated transporter), member 1, mRNA (cDNA clone MGC:26152 IMAGE:4823308), complete cds PA
BC035893.1 Homo sapiens solute carrier family 40 (iron-regulated transporter), member 1, mRNA (cDNA clone MGC:46472 IMAGE:5213437), complete cds PA

EST sequences (10 of 758) [Show all sequences]

AA954648.1 Clone IMAGE:1554893 kidney 3' read
AA863458.1 Clone IMAGE:1469369 uncharacterized tissue 3' read
AA983225.1 Clone IMAGE:1591838 kidney 3' read
AA993329.1 Clone IMAGE:1618227 testis 3' read
AA993572.1 Clone IMAGE:1624663 embryonic tissue 3' read
AA911206.1 Clone IMAGE:1526774 mixed 3' read A
AI015682.1 Clone IMAGE:1636114 kidney 3' read
AI016555.1 Clone IMAGE:1622397 embryonic tissue 3' read
AI028138.1 Clone IMAGE:1646155 parathyroid 3' read
AI031797.1 Clone IMAGE:1649969 parathyroid 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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