> Chromosome 6 open reading frame 48 (C6orf48)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:2147730     UniGene Hs.640836     Homo sapiens (human)   C6orf48 Order cDNA clone, Links
Chromosome 6 open reading frame 48 (C6orf48)

Human protein-coding gene C6orf48. Represented by 724 ESTs from 276 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 2147730 - Hs.640836]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001035527.1 C6orf48 gene product H. sapiens 100.0 74
Other hits (SpeciesId(%)Len(aa)
XP_003950837.1 PREDICTED: protein G8 P. troglodytes 97.3 74

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lung; brain; pancreas; eye; skin; mixed; embryonic tissue; mammary gland; uterus; adrenal gland; heart; connective tissue; parathyroid; thyroid; ascites; bone; uncharacterized tissue; intestine; thymus; stomach; esophagus; placenta; liver; prostate; testis; tonsil; muscle; kidney; pituitary gland; lymph; ovary; lymph node; cervix; vascular; larynx; bone marrow; blood; spleen; salivary gland; nerve; pineal gland; pharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p21.3
UniSTS entry: Chr 6 RH41849 [Map Viewer]
UniSTS entry: Chr 12 D7S840
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AJ249732.1 Homo sapiens mRNA for G8 protein (G8 gene, located in the class III region of the major histocompatibility complex), alternative splice variant lacking exon 2 PA
BC066330.1 Homo sapiens chromosome 6 open reading frame 48, mRNA (cDNA clone IMAGE:5260597) PA
NM_001040438.1 Homo sapiens chromosome 6 open reading frame 48 (C6orf48), transcript variant 2, mRNA P
NM_001040437.1 Homo sapiens chromosome 6 open reading frame 48 (C6orf48), transcript variant 1, mRNA P
BC000706.1 Homo sapiens chromosome 6 open reading frame 48, mRNA (cDNA clone MGC:1225 IMAGE:3349773), complete cds PA
BC017660.1 Homo sapiens chromosome 6 open reading frame 48, mRNA (cDNA clone MGC:14608 IMAGE:4049404), complete cds PA
AK311989.1 Homo sapiens cDNA, FLJ92262
AJ249731.1 Homo sapiens mRNA for G8 protein (G8 gene, located in the class III region of the major histocompatibility complex) PA

EST sequences (10 of 724) [Show all sequences]

AA863475.1 Clone IMAGE:1469389 uncharacterized tissue 3' read A
AA972532.1 Clone IMAGE:1435483 intestine 3' read PA
AA974842.1 Clone IMAGE:1567651 lung 3' read PA
AA983268.1 Clone IMAGE:1592483 kidney 3' read PA
AI002405.1 Clone IMAGE:1601951 lung 3' read PA
AI015058.1 Clone IMAGE:1640836 testis 3' read PA
AI024611.1 Clone IMAGE:1640955 testis 3' read PA
AI025956.1 Clone IMAGE:1646549 parathyroid 3' read PA
AI051012.1 Clone IMAGE:1649002 parathyroid 3' read PA
AI051063.1 Clone IMAGE:1649074 parathyroid 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help