Retinal degeneration 3 (RD3)

Restricted Expression:

eye [show more like this]

retinoblastoma [show more like this]

EST Profile:

Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]

GEO Profiles:

Experimental gene expression data (Gene Expression Omnibus).

cDNA Sources:

eye; pineal gland; brain; testis; embryonic tissue; uncharacterized tissue; mixed

NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs

UGID:2139389 UniGene Hs.632495 Homo sapiens (human) RD3

Order cDNA clone, Links

Retinal degeneration 3 (RD3)

Human protein-coding gene RD3. Represented by 38 ESTs from 13 cDNA libraries. EST representation biased toward eye; retinoblastoma. Corresponds to 2 reference sequences (different isoforms). [UniGene 2139389 - Hs.632495]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_001158160.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	RD3 gene product	H. sapiens	100.0	194
NP_076216.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	protein RD3 isoform 1	M. musculus	86.3	204
NP_001074100.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	rd3 gene product	D. rerio	56.0	207
Other hits (2 of 19) [Show all]		Species	Id(%)	Len(aa)
XP_001170072.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: protein RD3	P. troglodytes	99.5	194
XP_001107911.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: protein RD3-like	M. mulatta	96.0	98

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	1
Map position:	1q32.3
UniSTS entry:	Chr 1	WI-18112	[Map Viewer]
UniSTS entry:	Chr 1	D7S2067E

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AY191519.1	Homo sapiens C1ORF36 mRNA, complete cds	P
NM_183059.2	Homo sapiens retinal degeneration 3 (RD3), transcript variant 1, mRNA	PA
BX647803.1	Homo sapiens mRNA; cDNA DKFZp686G0496 (from clone DKFZp686G0496)	PA
BC065541.1	Homo sapiens retinal degeneration 3, mRNA (cDNA clone MGC:75344 IMAGE:6140075), complete cds	PA
AK291210.1	Homo sapiens cDNA FLJ75844 complete cds	P
NM_001164688.1	Homo sapiens retinal degeneration 3 (RD3), transcript variant 2, mRNA	PA
BC035651.1	Homo sapiens retinal degeneration 3, mRNA (cDNA clone IMAGE:5578431), with apparent retained intron	PA

EST sequences (10 of 38) [Show all sequences]

BX955397.1	Clone DKFZp781G1271	uncharacterized tissue	5' read
AW963480.1		uncharacterized tissue
CN411751.1		embryonic tissue	5' read
BE618160.1	Clone IMAGE:3865700	eye	5' read
H53390.1	Clone IMAGE:231173	pineal gland	5' read
H56527.1	Clone IMAGE:231394	pineal gland	5' read
H56707.1	Clone IMAGE:231394	pineal gland	3' read
AA719822.1	Clone IMAGE:414452	pineal gland	3' read	A
AV721413.2	Clone HTBBXG02	brain	5' read
AV722566.1	Clone HTBBKG10	brain	5' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria