> Calsequestrin 1 (fast-twitch, skeletal muscle) (CASQ1)
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UGID:2139370     UniGene Hs.632476     Homo sapiens (human)   CASQ1 Order cDNA clone, Links
Calsequestrin 1 (fast-twitch, skeletal muscle) (CASQ1)

Human protein-coding gene CASQ1. Represented by 222 ESTs from 52 cDNA libraries. Corresponds to reference sequence NM_001231.4. [UniGene 2139370 - Hs.632476]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001171165.2 PREDICTED: calsequestrin-1 P. troglodytes 100.0 395
NP_001222.3 CASQ1 gene product H. sapiens 100.0 395
XP_001115441.1 PREDICTED: calsequestrin-1-like, partial M. mulatta 99.6 244
NP_033943.2 Casq1 gene product M. musculus 96.7 396
NP_001080227.1 calsequestrin 1 (fast-twitch, skeletal muscle) precursor X. laevis 82.8 383
NP_001002682.1 casq2 gene product D. rerio 74.9 362
Other hits (2 of 21) [Show all]SpeciesId(%)Len(aa)
XP_850097.1 PREDICTED: calsequestrin-1 isoform 1 C. lupus familiaris 98.0 390
NP_001153066.1 Casq1 gene product R. norvegicus 97.5 396

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: muscle; heart; uncharacterized tissue; larynx; brain; prostate; liver; eye; mixed; mouth; intestine; pharynx; placenta; bladder
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q21
UniSTS entry: Chr 1 RH79623
UniSTS entry: Chr 1 RH17912 [Map Viewer]
UniSTS entry: Chr 1 RH64698 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

NM_001231.4 Homo sapiens calsequestrin 1 (fast-twitch, skeletal muscle) (CASQ1), nuclear gene encoding mitochondrial protein, mRNA PA
S73775.1 Homo sapiens calmitine mRNA, nuclear gene encoding mitochondrial product, complete cds PA
BC022289.1 Homo sapiens calsequestrin 1 (fast-twitch, skeletal muscle), mRNA (cDNA clone MGC:22462 IMAGE:4338020), complete cds PA
AK313250.1 Homo sapiens cDNA, FLJ93756, Homo sapiens calsequestrin 1 (fast-twitch, skeletal muscle)(CASQ1), nuclear gene encoding mitochondrial protein, mRNA P
AK300713.1 Homo sapiens cDNA FLJ51316 complete cds, highly similar to Calsequestrin-1 precursor P

EST sequences (10 of 222) [Show all sequences]

AI023647.1 Clone IMAGE:1651906 mixed 3' read A
AI141895.1 Clone IMAGE:1691773 heart 3' read A
BX091591.1 Clone IMAGp998P144295_;_IMAGE:1691773 heart
AI201842.1 Clone IMAGE:1944041 prostate 3' read A
AI351867.1 Clone IMAGE:1931569 mixed 3' read A
F26457.1 Clone s4000055E11 muscle A
F27719.1 Clone s4000012E07 muscle A
F29621.1 Clone s4000080G07 muscle
F29622.1 Clone s4000080G09 muscle
F30374.1 Clone s4000099H11 muscle A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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