> Serine/arginine-rich splicing factor 5 (SRSF5)
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UGID:2139220     UniGene Hs.632326     Homo sapiens (human)   SRSF5 Order cDNA clone, Links
Serine/arginine-rich splicing factor 5 (SRSF5)

Human protein-coding gene SRSF5. Represented by 1675 ESTs from 452 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 2139220 - Hs.632326]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003902030.1 PREDICTED: serine/arginine-rich splicing factor 5 P. anubis 100.0 271
XP_001143701.2 PREDICTED: serine/arginine-rich splicing factor 5 isoform 2 P. troglodytes 100.0 271
NP_001034554.1 SRSF5 gene product H. sapiens 100.0 271
XP_001109903.1 PREDICTED: splicing factor, arginine/serine-rich 5 isoform 2 M. mulatta 100.0 270
XP_002721708.1 PREDICTED: splicing factor, arginine/serine-rich 5 O. cuniculus 99.6 274
XP_004023549.1 PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing factor 5 O. aries 99.6 273
XP_867196.2 PREDICTED: serine/arginine-rich splicing factor 5 isoform 15 C. lupus familiaris 99.6 271
XP_001927454.2 PREDICTED: serine/arginine-rich splicing factor 5 isoform 1 S. scrofa 99.6 271
NP_001092399.1 SRSF5 gene product B. taurus 99.6 271
NP_001182516.1 splicing factor, arginine/serine-rich 5 E. caballus 99.6 270
NP_001073162.1 Srsf5 gene product M. musculus 99.6 268
NP_062130.2 serine/arginine-rich splicing factor 5 R. norvegicus 99.6 268
NP_001002610.1 srsf5b gene product D. rerio 84.6 284
NP_001079543.1 keratin 5, gene 1 b X. laevis 72.4 260
NP_788668.1 B52, isoform B D. melanogaster 63.7 311
NP_496442.1 Protein RSP-1, isoform a C. elegans 53.6 293
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_001370225.1 PREDICTED: serine/arginine-rich splicing factor 5-like M. domestica 99.2 264
XP_001517768.2 PREDICTED: serine/arginine-rich splicing factor 5-like, partial O. anatinus 99.2 250

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; thymus; placenta; embryonic tissue; testis; uterus; liver; skin; mixed; eye; lung; pancreas; uncharacterized tissue; prostate; intestine; kidney; spleen; mammary gland; bone; blood; connective tissue; trachea; pituitary gland; vascular; mouth; heart; cervix; amniotic fluid; adrenal gland; bladder; esophagus; stomach; lymph node; lymph; ganglia; ovary; bone marrow; parathyroid; pharynx; muscle; thyroid; ear; salivary gland; ascites; nerve; adipose tissue; epididymis; tonsil
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 14
Map position: 14q24
UniSTS entry: Chr 14 G31139
UniSTS entry: Chr 14 D14S1316
UniSTS entry: Chr 14 HSC2JH112 [Map Viewer]
UniSTS entry: Chr 14 A001W22
UniSTS entry: Chr 14 G19714
UniSTS entry: Chr 14 RH66199 [Map Viewer]
UniSTS entry: Chr 14 SHGC-35665 [Map Viewer]
UniSTS entry: Chr 16 RH91752
UniSTS entry: Chr 15 Rnu2
UniSTS entry: Chr 1 D11S3114
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AF070562.1 Homo sapiens clone 24529 mRNA sequence PA
BT007089.1 Homo sapiens splicing factor, arginine/serine-rich 5 mRNA, complete cds P
NM_006925.3 Homo sapiens serine/arginine-rich splicing factor 5 (SRSF5), transcript variant 2, mRNA P
CR542182.1 Homo sapiens full open reading frame cDNA clone RZPDo834F0224D for gene SFRS5, splicing factor, arginine/serine-rich 5; complete cds, without stopcodon P
CR542167.1 Homo sapiens full open reading frame cDNA clone RZPDo834C0624D for gene SFRS5, splicing factor, arginine/serine-rich 5; complete cds, incl. stopcodon P
U30826.1 Human splicing factor SRp40-1 (SRp40) mRNA, complete cds P
U30884.1 Human splicing factor SRp40-2 (SRp40) mRNA, complete cds P
NM_001039465.1 Homo sapiens serine/arginine-rich splicing factor 5 (SRSF5), transcript variant 1, mRNA P
BC018823.2 Homo sapiens splicing factor, arginine/serine-rich 5, mRNA (cDNA clone MGC:1236 IMAGE:3346982), complete cds PA
AK311805.1 Homo sapiens cDNA, FLJ92066, Homo sapiens splicing factor, arginine/serine-rich 5 (SFRS5), mRNA P
AK300560.1 Homo sapiens cDNA FLJ57437 complete cds, highly similar to Splicing factor, arginine/serine-rich 5 P
AK296113.1 Homo sapiens cDNA FLJ57379 complete cds, highly similar to Splicing factor, arginine/serine-rich 5 P
AB451374.1 Homo sapiens SFRS5 mRNA for splicing factor arginine/serine-rich 5, partial cds, clone: FLJ08060AAAF P
AB451250.1 Homo sapiens SFRS5 mRNA for splicing factor arginine/serine-rich 5, complete cds, clone: FLJ08060AAAN P
BC029984.2 Homo sapiens splicing factor, arginine/serine-rich 5, mRNA (cDNA clone IMAGE:4214118) PA
BC040209.1 Homo sapiens splicing factor, arginine/serine-rich 5, mRNA (cDNA clone MGC:42507 IMAGE:4823314), complete cds PA

EST sequences (10 of 1675) [Show all sequences]

AA973578.1 Clone IMAGE:1569289 lung 3' read A
AA974885.1 Clone IMAGE:1588756 kidney 3' read A
AI023093.1 Clone IMAGE:1650526 parathyroid 3' read A
AI027994.1 Clone IMAGE:1646116 parathyroid 3' read P
AI124778.1 Clone IMAGE:1539544 brain 3' read
CB048220.1 Clone IMAGE:3270642 prostate 3' read A
CB048221.1 Clone IMAGE:3270642 prostate 5' read A
CB049203.1 Clone IMAGE:3271292 prostate 3' read
CB069616.1 Clone IMAGE:6553721 pancreas 3' read A
CB070100.1 Clone IMAGE:6553721 pancreas 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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