> Survival motor neuron domain containing 1 (SMNDC1)
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UGID:2138987     UniGene Hs.632093     Homo sapiens (human)   SMNDC1 Order cDNA clone, Links
Survival motor neuron domain containing 1 (SMNDC1)

Human protein-coding gene SMNDC1. Represented by 240 ESTs from 135 cDNA libraries. Corresponds to reference sequence NM_005871.3. [UniGene 2138987 - Hs.632093]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_766017.1 Smndc1 gene product M. musculus 100.0 237
XP_001368587.1 PREDICTED: survival of motor neuron-related-splicing factor 30-like M. domestica 100.0 237
XP_001085864.1 PREDICTED: survival of motor neuron-related-splicing factor 30 M. mulatta 100.0 237
XP_003904294.1 PREDICTED: survival of motor neuron-related-splicing factor 30 isoform 1 P. anubis 100.0 237
XP_508030.2 PREDICTED: survival of motor neuron-related-splicing factor 30 isoform 3 P. troglodytes 100.0 237
NP_005862.1 SMNDC1 gene product H. sapiens 100.0 237
XP_535011.2 PREDICTED: survival of motor neuron-related-splicing factor 30 isoform 1 C. lupus familiaris 100.0 237
NP_001020571.1 Smndc1 gene product R. norvegicus 99.6 237
XP_001512808.2 PREDICTED: survival of motor neuron-related-splicing factor 30-like O. anatinus 99.6 237
NP_001030414.1 SMNDC1 gene product B. taurus 99.6 237
XP_004020236.1 PREDICTED: survival of motor neuron-related-splicing factor 30 O. aries 99.6 237
XP_002718782.1 PREDICTED: survival motor neuron domain containing 1 O. cuniculus 99.6 237
NP_997766.1 smndc1 gene product D. rerio 85.7 236
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
NP_001159781.1 SMNDC1 gene product S. scrofa 99.2 237
XP_002197711.1 PREDICTED: survival of motor neuron-related-splicing factor 30 T. guttata 98.3 237

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; larynx; placenta; uncharacterized tissue; mixed; cervix; thyroid; embryonic tissue; liver; vascular; kidney; uterus; lung; pancreas; muscle; mammary gland; blood; eye; bone; pituitary gland; tonsil; ear; pharynx; prostate; intestine; heart; connective tissue; skin; adipose tissue; bone marrow; lymph node; stomach; adrenal gland; mouth
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q23
UniSTS entry: Chr 10 WI-16106 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AF083385.1 Homo sapiens 30kDa splicing factor mRNA, complete cds P
AF107463.1 Homo sapiens splicing factor mRNA, complete cds PA
NM_005871.3 Homo sapiens survival motor neuron domain containing 1 (SMNDC1), mRNA PA
BC011234.1 Homo sapiens survival motor neuron domain containing 1, mRNA (cDNA clone MGC:17138 IMAGE:4153336), complete cds PA
AK314013.1 Homo sapiens cDNA, FLJ94669, highly similar to Homo sapiens survival motor neuron domain containing 1 (SMNDC1), mRNA P
BC039110.1 Homo sapiens survival motor neuron domain containing 1, mRNA (cDNA clone IMAGE:4831086), with apparent retained intron PA

EST sequences (10 of 240) [Show all sequences]

T05637.1 Clone HFBDD45 brain
AA902865.1 Clone IMAGE:1501634 kidney 3' read
AI038773.1 Clone IMAGE:1658746 embryonic tissue 3' read A
AI206293.1 Clone IMAGE:1942021 uncharacterized tissue 3' read A
AI275880.1 Clone IMAGE:1877493 mixed 3' read A
AA693368.1 Clone IMAGE:1157125 kidney 3' read
AI240949.1 Clone IMAGE:1867695 kidney 3' read A
AI242815.1 Clone IMAGE:1857783 mixed 3' read A
AI284362.1 Clone IMAGE:1857214 mixed 3' read A
AI306730.1 Clone IMAGE:1992644 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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