> Lysine (K)-specific demethylase 5C (KDM5C)
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UGID:2138662     UniGene Hs.631768     Homo sapiens (human)   KDM5C Order cDNA clone, Links
Lysine (K)-specific demethylase 5C (KDM5C)

Human protein-coding gene KDM5C. Represented by 444 ESTs from 192 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 2138662 - Hs.631768]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_004178.2 KDM5C gene product H. sapiens 100.0 1559
XP_003917799.1 PREDICTED: lysine-specific demethylase 5C P. anubis 99.8 1559
XP_002806302.1 PREDICTED: lysine-specific demethylase 5C M. mulatta 99.7 1413
NP_038696.2 Kdm5c gene product M. musculus 98.5 1550
NP_001116706.1 lysine-specific demethylase 5C D. rerio 77.7 1556
NP_001086949.1 coiled-coil domain-containing protein 124-B X. laevis 64.5 124
NP_523486.1 little imaginal discs, isoform A D. melanogaster 62.9 1044
NP_502032.2 Protein RBR-2 C. elegans 55.6 414
XP_961604.1 hypothetical protein NCU01238 N. crassa 54.6 317
NP_174367.6 transcription factor jumonji and C5HC2 type zinc finger domain-containing protein A. thaliana 54.3 304
NP_012653.1 Jhd2p S. cerevisiae 47.0 166
Other hits (2 of 53) [Show all]SpeciesId(%)Len(aa)
XP_002720062.1 PREDICTED: jumonji, AT rich interactive domain 1C O. cuniculus 99.4 1557
XP_004022117.1 PREDICTED: lysine-specific demethylase 5C isoform 1 O. aries 99.3 1557

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; larynx; stomach; testis; cervix; uterus; lymph; skin; tonsil; embryonic tissue; eye; lymph node; intestine; blood; thymus; placenta; thyroid; mammary gland; lung; mouth; prostate; muscle; mixed; pancreas; esophagus; kidney; trachea; ovary; liver; bone marrow; spinal cord; nerve; ganglia; connective tissue; bone; heart
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: Xp11.22-p11.21
UniSTS entry: Chr X PMC311008P3
UniSTS entry: Chr X Smcx
UniSTS entry: Chr X RH93069
UniSTS entry: Chr X RH81091
UniSTS entry: Chr X DXS1272E
UniSTS entry: Chr X RH80792
UniSTS entry: Chr X PMC24149P1
UniSTS entry: Chr 1 D11S3114
UniSTS entry: Chr 11 RH47256
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

BC054499.2 Homo sapiens jumonji, AT rich interactive domain 1C, mRNA (cDNA clone MGC:57577 IMAGE:5492114), complete cds PA
AY927614.1 Homo sapiens mRNA sequence
AY927613.1 Homo sapiens mRNA sequence
AY927525.1 Homo sapiens mRNA sequence P
NM_004187.3 Homo sapiens lysine (K)-specific demethylase 5C (KDM5C), transcript variant 1, mRNA P
L25270.1 Human XE169 mRNA, complete cds P
EF613277.1 Homo sapiens JARID1C protein (JARID1C) mRNA, complete cds, alternatively spliced PA
AK308077.1 Homo sapiens cDNA, FLJ98025 P
AK304732.1 Homo sapiens cDNA FLJ55294 complete cds, highly similar to Jumonji/ARID domain-containing protein 1C P
AF069136.1 Homo sapiens cDNA selection clone ADS56
Z29650.1 H.sapiens SMCX mRNA
NM_001146702.1 Homo sapiens lysine (K)-specific demethylase 5C (KDM5C), transcript variant 2, mRNA P

EST sequences (10 of 444) [Show all sequences]

AI014549.1 Clone IMAGE:1628763 mixed 3' read
AI124733.1 Clone IMAGE:1540045 brain 3' read P
BX110463.1 Clone IMAGp998B12731_;_IMAGE:322859 skin P
BX092564.1 Clone IMAGp998O223628_;_IMAGE:1435629 intestine A
AI221739.1 Clone IMAGE:1842746 mixed 3' read
CB158720.1 Clone L18POOL1n1-13-F09 liver 5' read
AI283506.1 Clone IMAGE:1854668 mixed 3' read
AI300138.1 Clone IMAGE:1902098 kidney 3' read A
AI351825.1 Clone IMAGE:1947122 uncharacterized tissue 3' read
AI547329.1 prostate 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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