> Metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) (MALAT1)
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UGID:2090706     UniGene Hs.621695     Homo sapiens (human)   MALAT1 Links
Metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) (MALAT1)

Human miscRNA gene MALAT1. Represented by 14031 ESTs from 1096 cDNA libraries. Corresponds to reference sequence NR_002819.2. [UniGene 2090706 - Hs.621695]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001120701.1 AURKAIP1 gene product H. sapiens 99.0 101
NP_001003728.1 zgc:92237 gene product D. rerio 91.2 102
NP_001080589.1 40S ribosomal protein S6 X. laevis 91.2 102
NP_079614.1 aurora kinase A-interacting protein M. musculus 76.2 100
XP_963431.1 40S ribosomal protein S6 N. crassa 73.5 102
Other hits (2 of 43) [Show all]SpeciesId(%)Len(aa)
XP_003307798.1 PREDICTED: aurora kinase A-interacting protein-like isoform 1 P. troglodytes 98.0 101
XP_001493621.1 PREDICTED: 60S ribosomal protein L6-like E. caballus 96.7 90

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; lung; brain; prostate; blood; mammary gland; pharynx; intestine; pancreas; uterus; kidney; placenta; muscle; testis; bone marrow; thyroid; mixed; larynx; eye; uncharacterized tissue; adrenal gland; embryonic tissue; pituitary gland; heart; vascular; ovary; stomach; adipose tissue; parathyroid; bone; skin; mouth; lymph node; connective tissue; thymus; salivary gland; epididymis; amniotic fluid; spinal cord; trachea; nerve; bladder; spleen; ear; cervix; ascites; ganglia; pineal gland; esophagus; tonsil; olfactory mucosa
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11q13.1
UniSTS entry: Chr 11 RH12529 [Map Viewer]
UniSTS entry: Chr 11 1192 [Map Viewer]
UniSTS entry: Chr 11 RH67818
UniSTS entry: Chr 11 A005V08
UniSTS entry: Chr 11 G20528
UniSTS entry: Chr 11 SHGC-35161 [Map Viewer]
UniSTS entry: Chr 11 WI-12191 [Map Viewer]
UniSTS entry: Chr 11 STS-T94789
UniSTS entry: Chr 11 SGC35206 [Map Viewer]
UniSTS entry: Chr 11 SGC30658 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

BX538238.1 Homo sapiens mRNA; cDNA DKFZp686B0790 (from clone DKFZp686B0790); complete cds A
BX640764.1 Homo sapiens mRNA; cDNA DKFZp686J04183 (from clone DKFZp686J04183) A
AK130345.1 Homo sapiens cDNA FLJ26835 fis, clone PRS07317
BC063689.1 Homo sapiens metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA), mRNA (cDNA clone IMAGE:4452150) A
BC104662.1 Homo sapiens cDNA clone IMAGE:6106210 A
EF177381.1 Homo sapiens nuclear enriched abundant transcript 2 (NEAT2) mRNA, complete sequence A
FJ209305.1 Homo sapiens MALAT1 mRNA, complete sequence A
BC025986.1 Homo sapiens cDNA clone IMAGE:3935402 A
BC018448.1 Homo sapiens metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA), mRNA (cDNA clone IMAGE:4452456) A
AF001542.1 Homo sapiens clone alpha_est218/52C1 mRNA sequence
AF001541.1 Homo sapiens clone alpha_S628 mRNA sequence
AF113016.1 Homo sapiens PRO1073 mRNA, complete cds
AL050210.1 Homo sapiens mRNA; cDNA DKFZp586G1023 (from clone DKFZp586G1023) A
X17272.1 Human heterogenous nuclear RNA W16W
NR_002819.2 Homo sapiens metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) (MALAT1), non-coding RNA A

EST sequences (10 of 14031) [Show all sequences]

T05414.1 Clone HFBCW67 brain
R14424.1 Clone IMAGE:29059 brain 5' read
AA903076.1 Clone IMAGE:1516989 uncharacterized tissue 3' read A
AA973283.1 Clone IMAGE:1564300 mixed 3' read A
AA976341.1 Clone IMAGE:1589592 kidney 3' read
AA984506.1 Clone IMAGE:1630125 brain 3' read
AA984996.1 Clone IMAGE:1577188 spleen 3' read A
AA985311.1 Clone IMAGE:1616314 brain 3' read
AA989267.1 Clone IMAGE:1604026 lung 3' read
AA992650.1 Clone IMAGE:1623169 embryonic tissue 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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