> Wolf-Hirschhorn syndrome candidate 1-like 1 (WHSC1L1)
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UGID:2077122     UniGene Hs.608111     Homo sapiens (human)   WHSC1L1 Order cDNA clone, Links
Wolf-Hirschhorn syndrome candidate 1-like 1 (WHSC1L1)

Human protein-coding gene WHSC1L1. Represented by 275 ESTs from 165 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 2077122 - Hs.608111]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_075447.1 WHSC1L1 gene product H. sapiens 100.0 1436
XP_519713.2 PREDICTED: histone-lysine N-methyltransferase NSD3 isoform 6 P. troglodytes 99.9 1436
XP_003902703.1 PREDICTED: histone-lysine N-methyltransferase NSD3 P. anubis 99.5 1437
NP_001074738.1 Whsc1l1 gene product M. musculus 93.8 1445
XP_694414.5 PREDICTED: histone-lysine N-methyltransferase NSD3 D. rerio 69.3 1530
NP_001084939.1 Wolf-Hirschhorn syndrome candidate 1 X. laevis 54.0 137
NP_733239.1 Mes-4, isoform A D. melanogaster 49.0 253
Other hits (2 of 40) [Show all]SpeciesId(%)Len(aa)
XP_001091186.2 PREDICTED: histone-lysine N-methyltransferase NSD3 isoform 2 M. mulatta 99.0 1418
XP_001492837.3 PREDICTED: histone-lysine N-methyltransferase NSD3 E. caballus 98.3 644

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; testis; pituitary gland; intestine; stomach; lung; cervix; placenta; mixed; liver; blood; uterus; mouth; eye; bone; prostate; mammary gland; trachea; thyroid; ovary; adipose tissue; larynx; lymph node; kidney; pancreas; bone marrow; embryonic tissue; connective tissue; esophagus; skin; muscle; thymus; epididymis
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8p11.2
UniSTS entry: MARC_17682-17683:1018452650:1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (25)

AK127594.1 Homo sapiens cDNA FLJ45689 fis, clone FCBBF3024911 P
BC062631.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1, mRNA (cDNA clone IMAGE:5246860), complete cds PA
AK000360.1 Homo sapiens cDNA FLJ20353 fis, clone HEP14780 PA
BC073858.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1, mRNA (cDNA clone IMAGE:4179405) PA
NM_017778.2 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1 (WHSC1L1), transcript variant short, mRNA P
BC101717.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant long, mRNA (cDNA clone MGC:126766 IMAGE:8069223), complete cds P
BC107734.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1, mRNA (cDNA clone IMAGE:4770567), partial cds PA
BC115006.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1, mRNA (cDNA clone MGC:131572 IMAGE:7961962), complete cds P
AJ295992.1 Homo sapiens mRNA for putative chromatin modulator, alternative splice NSD3S P
AJ295991.1 Homo sapiens mRNA for Putative Chromatin modulator, alternative splice NSD3L2 PA
AJ295990.1 Homo sapiens mRNA for putative chromatin modulator, alternative splice NSD3L PA
AF332469.1 Homo sapiens putative protein WHSC1L1l (WHSC1L1) mRNA, complete cds, alternatively spliced P
AF332468.1 Homo sapiens putative protein WHSC1L1s (WHSC1L1) mRNA, complete cds, alternatively spliced P
AF255649.1 Homo sapiens DC28 mRNA, complete cds P
BC113469.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1, mRNA (cDNA clone MGC:142029 IMAGE:8322521), complete cds P
NM_023034.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1 (WHSC1L1), transcript variant long, mRNA P
BC000030.2 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1, mRNA (cDNA clone IMAGE:3505788), partial cds PA
BC115007.1 Homo sapiens cDNA clone IMAGE:7961965, containing frame-shift errors P
BC012059.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1, mRNA (cDNA clone IMAGE:4552610), complete cds PA
BC115008.1 Homo sapiens cDNA clone IMAGE:7961970 P
AK092166.1 Homo sapiens cDNA FLJ34847 fis, clone NT2NE2011650 P
AL832895.1 Homo sapiens mRNA; cDNA DKFZp667H044 (from clone DKFZp667H044) PA
AF318339.1 Homo sapiens pp14328 mRNA, complete cds PA
BC007787.2 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1, mRNA (cDNA clone IMAGE:3546345), partial cds PA
BC143510.1 Homo sapiens Wolf-Hirschhorn syndrome candidate 1-like 1, mRNA (cDNA clone MGC:177035 IMAGE:9052018), complete cds P

EST sequences (10 of 275) [Show all sequences]

R21001.1 Clone IMAGE:36406 brain 5' read
CB067061.1 Clone IMAGE: pancreas 5' read
BX114741.1 Clone IMAGp998F14690_;_IMAGE:307213 lung
T06559.1 Clone HFBDV19 brain
CB143886.1 Clone L16HLK3-24-D12 liver 5' read
AI245374.1 Clone IMAGE:1869821 kidney 3' read
R38419.1 Clone IMAGE:26274 brain 3' read
AI417520.1 Clone IMAGE:2114968 mixed 3' read A
CB216161.1 Clone IMAGE:5937685 uterus 5' read P
AI458145.1 Clone IMAGE:2146339 mixed 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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