> SHQ1, H/ACA ribonucleoprotein assembly factor (SHQ1)
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UGID:2075595     UniGene Hs.606584     Homo sapiens (human)   SHQ1 Order cDNA clone, Links
SHQ1, H/ACA ribonucleoprotein assembly factor (SHQ1)

Human protein-coding gene SHQ1. Represented by 200 ESTs from 118 cDNA libraries. Corresponds to reference sequence NM_018130.2. [UniGene 2075595 - Hs.606584]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001141951.1 PREDICTED: uncharacterized protein LOC460507 isoform 2 P. troglodytes 100.0 576
NP_060600.2 SHQ1 gene product H. sapiens 100.0 576
NP_853621.2 Shq1 gene product M. musculus 86.5 561
NP_001124419.1 SHQ1 homolog X. laevis 69.0 542
NP_001074069.1 shq1 gene product D. rerio 64.0 503
NP_001023025.1 Protein GRL-25, isoform a C. elegans 46.3 214
XP_001695130.1 cell wall protein pherophorin-C10 C. reinhardtii 46.0 263
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
XP_003894232.1 PREDICTED: protein SHQ1 homolog P. anubis 97.8 576
XP_001082636.1 PREDICTED: protein SHQ1 homolog isoform 2 M. mulatta 97.4 576

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; skin; mouth; thymus; mixed; kidney; ovary; connective tissue; cervix; spleen; stomach; prostate; uterus; uncharacterized tissue; placenta; vascular; embryonic tissue; lung; heart; trachea; mammary gland; liver; muscle; eye; ascites; blood; intestine; bone; bladder; pancreas; bone marrow; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3p13
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

BC047879.2 Homo sapiens SHQ1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:57602 IMAGE:5541019), complete cds PA
BX641074.1 Homo sapiens mRNA; cDNA DKFZp686H07226 (from clone DKFZp686H07226) PA
AK001401.1 Homo sapiens cDNA FLJ10539 fis, clone NT2RP2001218 P
NM_018130.2 Homo sapiens SHQ1, H/ACA ribonucleoprotein assembly factor (SHQ1), mRNA PA
AK092962.1 Homo sapiens cDNA FLJ35643 fis, clone SPLEN2012524 P
AK296789.1 Homo sapiens cDNA FLJ59713 complete cds, highly similar to Homo sapiens SHQ1 homolog (SHQ1), mRNA P
BC032671.1 Homo sapiens SHQ1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:45071 IMAGE:5538687), complete cds PA
BC025270.1 Homo sapiens SHQ1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:39169 IMAGE:4622871), complete cds PA
BC017274.2 Homo sapiens SHQ1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:29788 IMAGE:4840343), complete cds PA
BC017204.2 Homo sapiens SHQ1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:3423 IMAGE:3617948), complete cds PA
BC039830.1 Homo sapiens SHQ1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:48775 IMAGE:6064610), complete cds PA

EST sequences (10 of 200) [Show all sequences]

AA987970.1 Clone IMAGE:1603441 lung 3' read
CB046676.1 Clone IMAGE:3252765 kidney 5' read A
CB046675.1 Clone IMAGE:3252765 kidney 3' read A
AI151469.1 Clone IMAGE:1715365 placenta 3' read A
AI188402.1 Clone IMAGE:1723132 placenta 3' read A
CB216026.1 Clone IMAGE:5937523 uterus 5' read P
AI476821.1 Clone IMAGE:2148082 mixed 3' read A
AI570146.1 Clone IMAGE:2184113 stomach 3' read A
AI623526.1 Clone IMAGE:2229085 pancreas 3' read A
AI559815.1 Clone IMAGE:2180664 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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