> Nuclear cap binding protein subunit 1, 80kDa (NCBP1)
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UGID:2064680     UniGene Hs.595669     Homo sapiens (human)   NCBP1 Order cDNA clone, Links
Nuclear cap binding protein subunit 1, 80kDa (NCBP1)

Human protein-coding gene NCBP1. Represented by 350 ESTs from 169 cDNA libraries. Corresponds to reference sequence NM_002486.4. [UniGene 2064680 - Hs.595669]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003911518.1 PREDICTED: nuclear cap-binding protein subunit 1 P. anubis 100.0 789
XP_520138.3 PREDICTED: nuclear cap-binding protein subunit 1 P. troglodytes 100.0 789
NP_002477.1 NCBP1 gene product H. sapiens 100.0 789
XP_003353635.2 PREDICTED: nuclear cap-binding protein subunit 1-like S. scrofa 100.0 210
XP_532003.2 PREDICTED: nuclear cap-binding protein subunit 1 isoform 1 C. lupus familiaris 99.9 789
XP_003582593.1 PREDICTED: nuclear cap-binding protein subunit 1 B. taurus 99.8 789
XP_004004282.1 PREDICTED: nuclear cap-binding protein subunit 1 O. aries 99.6 789
XP_001495451.2 PREDICTED: nuclear cap-binding protein subunit 1 E. caballus 99.6 786
XP_002800094.1 PREDICTED: nuclear cap-binding protein subunit 1-like M. mulatta 99.5 867
NP_001028373.2 nuclear cap-binding protein subunit 1 M. musculus 98.7 789
NP_001085510.1 nuclear cap-binding protein subunit 1-A X. laevis 88.4 790
NP_726938.1 cap binding protein 80, isoform A D. melanogaster 62.0 799
NP_491850.2 Protein NCBP-1 C. elegans 45.7 175
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
NP_001014785.1 Ncbp1 gene product R. norvegicus 98.9 789
XP_001521089.2 PREDICTED: nuclear cap-binding protein subunit 1 O. anatinus 96.9 671

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; mixed; uncharacterized tissue; thyroid; amniotic fluid; adrenal gland; mouth; intestine; placenta; pancreas; heart; embryonic tissue; skin; vascular; kidney; lung; mammary gland; stomach; thymus; eye; muscle; prostate; uterus; blood; connective tissue; bone marrow; liver; ovary; bone; cervix; ascites; lymph; spleen; lymph node; trachea; tonsil; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q34.1
UniSTS entry: Chr 9 SHGC-12947 [Map Viewer]
UniSTS entry: Chr 9 RH102496
UniSTS entry: Chr 9 RH68376 [Map Viewer]
UniSTS entry: Chr 9 NCBP1_4020
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

NM_002486.4 Homo sapiens nuclear cap binding protein subunit 1, 80kDa (NCBP1), mRNA P
D32002.1 Homo sapiens mRNA for nuclear cap binding protein, complete cds P
AB209233.1 Homo sapiens mRNA for nuclear cap binding protein subunit 1, 80kDa variant protein P
BC001450.2 Homo sapiens nuclear cap binding protein subunit 1, 80kDa, mRNA (cDNA clone MGC:2087 IMAGE:3138757), complete cds PA
AK312807.1 Homo sapiens cDNA, FLJ93236, highly similar to Homo sapiens nuclear cap binding protein subunit 1, 80kDa (NCBP1),mRNA P
X80030.1 H.sapiens CBP80 mRNA P

EST sequences (10 of 350) [Show all sequences]

AA886393.1 Clone IMAGE:1500670 kidney 3' read A
AI081311.1 Clone IMAGE:1661885 mixed 3' read A
AI122821.1 Clone IMAGE:1640660 testis 3' read A
AI129344.1 Clone IMAGE:1712843 uterus 3' read A
CB044782.1 Clone IMAGE:3218047 intestine 5' read P
CB051553.1 Clone IMAGE:3289720 uncharacterized tissue 3' read
CB163826.1 Clone L17N670205n1-28-B10 liver 5' read
CB121904.1 Clone L8SCK0-14-C11 liver 5' read PA
AI242582.1 Clone IMAGE:1856772 mixed 3' read A
AA770351.1 Clone 1322213 testis 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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