> CCR4-NOT transcription complex, subunit 6-like (CNOT6L)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:2061530     UniGene Hs.592519     Homo sapiens (human)   CNOT6L Links
CCR4-NOT transcription complex, subunit 6-like (CNOT6L)

Human protein-coding gene CNOT6L. Represented by 275 ESTs from 142 cDNA libraries. Corresponds to reference sequence NM_144571.2. [UniGene 2061530 - Hs.592519]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001092697.2 PREDICTED: CCR4-NOT transcription complex subunit 6-like isoform 1 M. mulatta 100.0 554
XP_003898770.1 PREDICTED: CCR4-NOT transcription complex subunit 6-like isoform 1 P. anubis 100.0 554
XP_003310375.1 PREDICTED: CCR4-NOT transcription complex, subunit 6-like isoform 1 P. troglodytes 100.0 554
NP_653172.2 CNOT6L gene product H. sapiens 100.0 554
XP_003364735.1 PREDICTED: CCR4-NOT transcription complex, subunit 6-like isoform 2 E. caballus 100.0 554
NP_001178452.1 CCR4-NOT transcription complex subunit 6-like B. taurus 100.0 554
XP_004009981.1 PREDICTED: CCR4-NOT transcription complex subunit 6-like O. aries 100.0 554
XP_002717141.1 PREDICTED: CCR4-NOT transcription complex, subunit 6-like isoform 1 O. cuniculus 100.0 554
XP_544939.2 PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex, subunit 6-like isoform 1 C. lupus familiaris 99.6 561
NP_849185.2 Cnot6l gene product M. musculus 98.7 554
NP_001085037.1 CCR4-NOT transcription complex subunit 6-like-A X. laevis 91.1 549
NP_001018474.1 cnot6l gene product D. rerio 86.5 546
NP_732967.1 twin, isoform B D. melanogaster 60.9 524
NP_001023608.1 Protein CCR-4, isoform c C. elegans 54.8 549
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
NP_001101825.1 CCR4-NOT transcription complex subunit 6-like R. norvegicus 98.7 549
XP_001362576.2 PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 6-like M. domestica 98.4 554

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; placenta; mixed; testis; uncharacterized tissue; lung; liver; spleen; adipose tissue; adrenal gland; eye; lymph node; blood; kidney; embryonic tissue; bladder; skin; cervix; nerve; esophagus; trachea; pancreas; mammary gland; spinal cord; uterus; muscle; thymus; intestine; pharynx; prostate; vascular; bone marrow; salivary gland; ear; stomach; connective tissue; heart; umbilical cord; bone; ovary; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4q13.3
UniSTS entry: Chr 4 SHGC-36234
UniSTS entry: Chr 4 A006V35
UniSTS entry: Chr 4 SHGC4-1546
UniSTS entry: Chr 4 G33447
UniSTS entry: Chr 15 CNOT6L
UniSTS entry: Chr 4 G34328
UniSTS entry: Chr 4 D4S623E
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AK124855.1 Homo sapiens cDNA FLJ42865 fis, clone BRHIP2018712 A
AL133112.1 Homo sapiens mRNA; cDNA DKFZp434K098 (from clone DKFZp434K098); partial cds PA
AK027214.1 Homo sapiens cDNA: FLJ23561 fis, clone LNG09974 PA
AK058188.1 Homo sapiens cDNA FLJ25459 fis, clone TST09038 P
NM_144571.2 Homo sapiens CCR4-NOT transcription complex, subunit 6-like (CNOT6L), mRNA P
AK304397.1 Homo sapiens cDNA FLJ57444 complete cds, highly similar to Mus musculus CCR4-NOT transcription complex, subunit 6-like (Cnot6l), transcript variant 1, mRNA P
AK303417.1 Homo sapiens cDNA FLJ58660 complete cds, highly similar to Mus musculus CCR4-NOT transcription complex, subunit 6-like (Cnot6l), transcript variant 1, mRNA P

EST sequences (10 of 275) [Show all sequences]

AA947922.1 Clone IMAGE:1415981 lung 3' read
AA976703.1 Clone IMAGE:1585542 lung 3' read
AA984738.1 Clone IMAGE:1630383 brain 3' read
AA904498.1 Clone IMAGE:1524556 mixed 3' read A
T05982.1 Clone HFBDK50 brain
AI122950.1 Clone IMAGE:1509503 mixed 3' read
BX089295.1 Clone IMAGp998O15199_;_IMAGE:138086 placenta
AI218332.1 Clone IMAGE:1845336 mixed 3' read
AI268902.1 Clone IMAGE:1911833 intestine 3' read
CB135666.1 Clone L14ChoiCK0-30-A08 liver 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help