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UGID:2061195     UniGene Hs.592184     Homo sapiens (human)   VPS41
Vacuolar protein sorting 41 homolog (S. cerevisiae) (VPS41)

Human protein-coding gene VPS41. Represented by 439 ESTs from 189 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 2061195 - Hs.592184]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001101460.2 PREDICTED: vacuolar protein sorting-associated protein 41 homolog isoform 1 M. mulatta 100.0 853
XP_519057.3 PREDICTED: vacuolar protein sorting-associated protein 41 homolog isoform 3 P. troglodytes 100.0 853
NP_055211.2 VPS41 gene product H. sapiens 100.0 853
XP_003896135.1 PREDICTED: vacuolar protein sorting-associated protein 41 homolog, partial P. anubis 99.7 725
NP_742118.3 Vps41 gene product M. musculus 98.7 852
XP_691671.2 PREDICTED: vacuolar protein sorting-associated protein 41 homolog D. rerio 86.0 853
Other hits (2 of 41) [Show all]SpeciesId(%)Len(aa)
XP_002713723.1 PREDICTED: vacuolar protein sorting 41 O. cuniculus 99.3 840
XP_001494326.3 PREDICTED: vacuolar protein sorting-associated protein 41 homolog E. caballus 99.2 857

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; uncharacterized tissue; liver; eye; ear; thyroid; stomach; embryonic tissue; kidney; skin; placenta; pharynx; prostate; ovary; spleen; esophagus; thymus; lung; trachea; muscle; intestine; connective tissue; mouth; pancreas; bone marrow; bone; uterus; pituitary gland; larynx; mammary gland; mixed; cervix; ascites; vascular; lymph node; parathyroid; umbilical cord; nerve; blood; adrenal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7p14-p13
UniSTS entry: Chr 7 SHGC-56039 [Map Viewer]
UniSTS entry: Chr 1 D10S275
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

BC044851.1 Homo sapiens vacuolar protein sorting 41 homolog (S. cerevisiae), mRNA (cDNA clone MGC:42423 IMAGE:4822048), complete cds PA
BX648347.1 Homo sapiens mRNA; cDNA DKFZp686I08170 (from clone DKFZp686I08170) PA
NM_014396.3 Homo sapiens vacuolar protein sorting 41 homolog (S. cerevisiae) (VPS41), transcript variant 1, mRNA P
AK026848.1 Homo sapiens cDNA: FLJ23195 fis, clone REC00843, highly similar to HSU87309 Human hVps41p (HVPS41) mRNA PA
NM_080631.3 Homo sapiens vacuolar protein sorting 41 homolog (S. cerevisiae) (VPS41), transcript variant 2, mRNA P
AK314556.1 Homo sapiens cDNA, FLJ95380, highly similar to Homo sapiens vacuolar protein sorting 41 (yeast) (VPS41), transcript variant 1, mRNA P
AK074325.1 Homo sapiens cDNA FLJ23745 fis, clone HEP15778, highly similar to VACUOLAR ASSEMBLY PROTEIN VPS41 HOMOLOG PA
AK299143.1 Homo sapiens cDNA FLJ58251 complete cds, highly similar to Vacuolar assembly protein VPS41 homolog P
U87309.1 Human hVps41p (HVPS41) mRNA, complete cds PA
U87281.1 Human hVps41p (hVPS41) mRNA, alternative splice variant, partial cds PA
L40398.1 Homo sapiens (clone S53) mRNA, 3' end of cds P

EST sequences (10 of 439) [Show all sequences]

R18288.1 Clone IMAGE:30811 brain 5' read P
AI024072.1 Clone IMAGE:1642869 testis 3' read A
AI027105.1 Clone IMAGE:1649767 parathyroid 3' read A
AA864386.1 Clone IMAGE:1469728 uncharacterized tissue 3' read P
AA906736.1 Clone IMAGE:1520121 uncharacterized tissue 3' read A
CB046463.1 Clone IMAGE:3252639 kidney 3' read A
CB047860.1 Clone IMAGE:3270566 prostate 3' read
CB047861.1 Clone IMAGE:3270566 prostate 5' read A
CB050920.1 Clone IMAGE:3289274 prostate 5' read
BX113483.1 Clone IMAGp998F11130_;_IMAGE:127498 mixed P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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