> Nuclear cap binding protein subunit 2, 20kDa (NCBP2)
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UGID:2060682     UniGene Hs.591671     Homo sapiens (human)   NCBP2 Order cDNA clone, Links
Nuclear cap binding protein subunit 2, 20kDa (NCBP2)

Human protein-coding gene NCBP2. Represented by 774 ESTs from 282 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 2060682 - Hs.591671]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_080830.1 Ncbp2 gene product M. musculus 100.0 155
NP_001102995.1 Pigz gene product R. norvegicus 100.0 155
XP_002803120.1 PREDICTED: nuclear cap-binding protein subunit 2-like isoform 2 M. mulatta 100.0 155
XP_516977.2 PREDICTED: nuclear cap-binding protein subunit 2 isoform 3 P. troglodytes 100.0 155
NP_031388.2 NCBP2 gene product H. sapiens 100.0 155
XP_535779.1 PREDICTED: nuclear cap-binding protein subunit 2 isoform 2 C. lupus familiaris 100.0 155
XP_001501058.1 PREDICTED: nuclear cap-binding protein subunit 2 isoform 1 E. caballus 100.0 155
XP_003358812.2 PREDICTED: nuclear cap-binding protein subunit 2 isoform 1 S. scrofa 100.0 155
NP_001029568.1 NCBP2 gene product B. taurus 100.0 155
XP_004003065.1 PREDICTED: nuclear cap-binding protein subunit 2 isoform 1 O. aries 100.0 155
NP_001167476.1 nuclear cap binding protein subunit 2, 20kDa X. laevis 89.3 150
NP_775356.1 ncbp2 gene product D. rerio 86.8 150
NP_524396.1 cap binding protein 20 D. melanogaster 81.2 144
NP_001078705.1 nuclear cap-binding protein subunit 2 A. thaliana 72.8 151
NP_001250552.1 Protein NCBP-2, isoform a C. elegans 69.7 152
XP_956595.1 nuclear cap binding protein subunit 2 N. crassa 69.4 121
XP_001690572.1 hypothetical protein CHLREDRAFT_169371 C. reinhardtii 66.9 147
NP_015147.1 Cbc2p S. cerevisiae 63.2 136
Other hits (2 of 48) [Show all]SpeciesId(%)Len(aa)
XP_002716573.1 PREDICTED: nuclear cap binding protein subunit 2, 20kDa isoform 1 O. cuniculus 99.4 155
XP_001371322.1 PREDICTED: nuclear cap-binding protein subunit 2-like isoform 1 M. domestica 96.2 155

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; uterus; uncharacterized tissue; embryonic tissue; kidney; thymus; intestine; pituitary gland; mammary gland; lymph node; bladder; lung; prostate; adrenal gland; ovary; skin; spleen; vascular; connective tissue; stomach; esophagus; blood; mouth; placenta; pancreas; mixed; eye; heart; liver; muscle; pharynx; thyroid; bone marrow; larynx; salivary gland; amniotic fluid; ear; bone; cervix; trachea; lymph; adipose tissue; ganglia; umbilical cord; ascites; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q29
UniSTS entry: Chr 3 WI-18726 [Map Viewer]
UniSTS entry: Chr 3 D3S4203 [Map Viewer]
UniSTS entry: Chr 3 SHGC-77714 [Map Viewer]
UniSTS entry: RH124294
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

BT006842.1 Homo sapiens nuclear cap binding protein subunit 2, 20kDa mRNA, complete cds P
AL110262.1 Homo sapiens mRNA; cDNA DKFZp586F0221 (from clone DKFZp586F0221) A
NM_007362.3 Homo sapiens nuclear cap binding protein subunit 2, 20kDa (NCBP2), transcript variant 1, mRNA P
X84157.1 H.sapiens mRNA for CBP20 P
D59253.1 Homo sapiens mRNA for NCBP interacting protein 1, complete cds P
AY644767.1 Homo sapiens cell proliferation-inducing gene 55 mRNA, complete cds P
BC001255.1 Homo sapiens nuclear cap binding protein subunit 2, 20kDa, mRNA (cDNA clone MGC:4991 IMAGE:3458927), complete cds PA
NM_001042540.1 Homo sapiens nuclear cap binding protein subunit 2, 20kDa (NCBP2), transcript variant 2, mRNA P
AK308192.1 Homo sapiens cDNA, FLJ98140 P
AK316601.1 Homo sapiens cDNA, FLJ96704, Homo sapiens nuclear cap binding protein subunit 2, 20kDa (NCBP2), mRNA P
AK093216.1 Homo sapiens cDNA FLJ35897 fis, clone TESTI2009502, highly similar to Nuclear cap-binding protein subunit 2 P
AK297506.1 Homo sapiens cDNA FLJ52517 complete cds, highly similar to Nuclear cap-binding protein subunit 2 P
AK296144.1 Homo sapiens cDNA FLJ52508 complete cds, highly similar to Nuclear cap-binding protein subunit 2 P
AK315903.1 Homo sapiens cDNA, FLJ78802 complete cds, highly similar to Nuclear cap-binding protein subunit 2 P

EST sequences (10 of 774) [Show all sequences]

AA907279.1 Clone IMAGE:1521928 lung 3' read A
AI041144.1 Clone IMAGE:1642606 testis 3' read A
AI056705.1 Clone IMAGE:1669576 brain 3' read A
AI077703.1 Clone IMAGE:1670147 brain 3' read A
AI088563.1 Clone IMAGE:1696045 uterus 3' read A
AI089815.1 Clone IMAGE:1686444 brain 3' read A
AI129841.1 Clone IMAGE:1711562 uterus 3' read A
AI147235.1 Clone IMAGE:1698382 uterus 3' read A
AI086645.1 Clone IMAGE:1681319 skin 3' read A
AI086948.1 Clone IMAGE:1680731 skin 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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