> SET binding factor 1 (SBF1)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:1958713     UniGene Hs.589924     Homo sapiens (human)   SBF1 Order cDNA clone, Links
SET binding factor 1 (SBF1)

Human protein-coding gene SBF1. Represented by 592 ESTs from 186 cDNA libraries. Corresponds to reference sequence NM_002972.2. [UniGene 1958713 - Hs.589924]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_002963.2 SBF1 gene product H. sapiens 100.0 1892
XP_525633.3 PREDICTED: LOW QUALITY PROTEIN: myotubularin-related protein 5 P. troglodytes 99.9 1892
XP_003905800.1 PREDICTED: myotubularin-related protein 5 P. anubis 99.7 1892
NP_001164032.1 Sbf1 gene product M. musculus 97.7 1892
NP_001038623.1 myotubularin-related protein 5 D. rerio 78.4 1848
NP_001084507.1 myotubularin-related protein 13 X. laevis 66.6 1872
NP_731633.2 SET domain binding factor, isoform B D. melanogaster 53.3 1567
Other hits (2 of 35) [Show all]SpeciesId(%)Len(aa)
NP_001258102.1 myotubularin-related protein 5 R. norvegicus 98.0 1892
XP_538311.3 PREDICTED: myotubularin-related protein 5 C. lupus familiaris 97.7 1582

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lymph node; brain; uncharacterized tissue; testis; pancreas; lung; mixed; intestine; lymph; tonsil; stomach; larynx; pharynx; nerve; embryonic tissue; placenta; blood; skin; ovary; eye; cervix; muscle; kidney; thymus; prostate; uterus; thyroid; mammary gland; connective tissue; liver; salivary gland; bone; adipose tissue; bone marrow; ascites; bladder; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 22
Map position: 22q13.33
UniSTS entry: Chr 22 RH11296
UniSTS entry: Chr 8 STS-T23637 [Map Viewer]
UniSTS entry: Chr 8 RH47520
UniSTS entry: Chr 22 SBF1_8611
UniSTS entry: Chr 22 RH46917
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

BC046169.2 Homo sapiens SET binding factor 1, mRNA (cDNA clone IMAGE:6192910), partial cds PA
BC056915.1 Homo sapiens SET binding factor 1, mRNA (cDNA clone IMAGE:6142405), partial cds PA
NM_002972.2 Homo sapiens SET binding factor 1 (SBF1), mRNA PA
CR749672.1 Homo sapiens mRNA; cDNA DKFZp761D0422 (from clone DKFZp761D0422) P
BC087612.1 Homo sapiens SET binding factor 1, mRNA (cDNA clone MGC:99700 IMAGE:6671883), complete cds PA
AB209682.1 Homo sapiens mRNA for SET binding factor 1 isoform a variant protein P
BC111424.1 Homo sapiens cDNA clone IMAGE:40037678
BC009268.1 Homo sapiens SET binding factor 1, mRNA (cDNA clone IMAGE:3028662), partial cds PA
AK057985.1 Homo sapiens cDNA FLJ25256 fis, clone STM03946, highly similar to Homo sapiens nuclear dual-specificity phosphatase (SBF1) mRNA P
BC024101.1 Homo sapiens SET binding factor 1, mRNA (cDNA clone IMAGE:2960236), containing frame-shift errors PA
AF072929.1 Homo sapiens myotubularin related protein 5 mRNA, partial cds P
BC040031.1 Homo sapiens SET binding factor 1, mRNA (cDNA clone IMAGE:5770163) P
U93181.1 Homo sapiens nuclear dual-specificity phosphatase (SBF1) mRNA, partial cds PA

EST sequences (10 of 592) [Show all sequences]

R18489.1 Clone IMAGE:30258 brain 5' read
AA922181.1 Clone IMAGE:1543697 mixed 3' read
AI041047.1 Clone IMAGE:1642581 testis 3' read
AI073436.1 Clone IMAGE:1566088 mixed 3' read
AA947875.1 Clone IMAGE:1508507 mixed 3' read
AI149823.1 Clone IMAGE:1752785 testis 3' read
BX101799.1 Clone IMAGp998E11272_;_IMAGE:45764 brain P
AI185879.1 Clone IMAGE:1741903 lung 3' read P
AI220055.1 Clone IMAGE:1841856 mixed 3' read
AI274889.1 Clone IMAGE:1873498 intestine 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help