> VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) (VMA21)
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UGID:138535     UniGene Hs.58633     Homo sapiens (human)   VMA21 Order cDNA clone, Links
VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) (VMA21)

Human protein-coding gene VMA21. Represented by 243 ESTs from 108 cDNA libraries. Corresponds to reference sequence NM_001017980.3. [UniGene 138535 - Hs.58633]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003918464.1 PREDICTED: vacuolar ATPase assembly integral membrane protein VMA21 P. anubis 100.0 100
XP_001136167.1 PREDICTED: vacuolar ATPase assembly integral membrane protein VMA21 P. troglodytes 100.0 100
NP_001017980.1 VMA21 gene product H. sapiens 100.0 100
NP_001074825.1 Vma21 gene product M. musculus 97.0 100
NP_001089490.1 vacuolar ATPase assembly integral membrane protein VMA21 X. laevis 78.8 103
Other hits (2 of 14) [Show all]SpeciesId(%)Len(aa)
XP_001067193.2 PREDICTED: vacuolar ATPase assembly integral membrane protein VMA21 R. norvegicus 98.0 100
XP_002721373.1 PREDICTED: hypothetical protein O. cuniculus 98.0 100

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; skin; uncharacterized tissue; lung; mixed; kidney; prostate; liver; embryonic tissue; mammary gland; uterus; connective tissue; ear; eye; heart; ganglia; bone; larynx; blood; lymph node; mouth; muscle; placenta; intestine; vascular; thymus; stomach; trachea; adrenal gland; bladder; pancreas; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: Xq28
UniSTS entry: Chr X RH93612
UniSTS entry: Chr X DXS963E
UniSTS entry: Chr 1 D11S3114
UniSTS entry: Chr 1 D16S325
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

NM_001017980.3 Homo sapiens VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) (VMA21), mRNA P
AK025798.1 Homo sapiens cDNA: FLJ22145 fis, clone HEP22070 A
BC103701.1 Homo sapiens VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), mRNA (cDNA clone MGC:125516 IMAGE:40023465), complete cds P
BC103702.1 Homo sapiens VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), mRNA (cDNA clone MGC:125514 IMAGE:40023460), complete cds P
BC110800.1 Homo sapiens VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), mRNA (cDNA clone MGC:131652 IMAGE:6044374), complete cds PA
BC105693.1 Homo sapiens VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), mRNA (cDNA clone MGC:125515 IMAGE:40023462), complete cds P
BC105694.1 Homo sapiens VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), mRNA (cDNA clone MGC:125513 IMAGE:40023459), complete cds P
AK096835.1 Homo sapiens cDNA FLJ39516 fis, clone PUAEN2000374 P
AK091301.1 Homo sapiens cDNA FLJ33982 fis, clone DFNES2004676, weakly similar to ZINC FINGER PROTEIN 195
AL833596.1 Homo sapiens mRNA; cDNA DKFZp686B0267 (from clone DKFZp686B0267) PA
AF086459.1 Homo sapiens full length insert cDNA clone ZD84G09 A

EST sequences (10 of 243) [Show all sequences]

AA903131.1 Clone IMAGE:1517606 uncharacterized tissue 3' read A
AA976771.1 Clone IMAGE:1585864 uncharacterized tissue 3' read A
AA989435.1 Clone IMAGE:1606205 kidney 3' read A
AI078559.1 Clone IMAGE:1677539 mixed 3' read A
CB052374.1 Clone IMAGE:3290258 uncharacterized tissue 3' read A
AI189825.1 Clone IMAGE:1724169 placenta 3' read A
CB116515.1 Clone L3SNU475s1-11-F07 liver 5' read
CB107289.1 Clone L4SNU368-1-B11 liver 5' read PA
CB111198.1 Clone L4SNU368-16-F04 liver 5' read P
CB122601.1 Clone L10ChoCK0-13-D02 liver 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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