> Ceroid-lipofuscinosis, neuronal 6, late infantile, variant (CLN6)
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UGID:1953710     UniGene Hs.584921     Homo sapiens (human)   CLN6 Order cDNA clone, Links
Ceroid-lipofuscinosis, neuronal 6, late infantile, variant (CLN6)

Human protein-coding gene CLN6. Represented by 312 ESTs from 156 cDNA libraries. Corresponds to reference sequence NM_017882.2. [UniGene 1953710 - Hs.584921]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_060352.1 CLN6 gene product H. sapiens 100.0 310
XP_001082578.2 PREDICTED: ceroid-lipofuscinosis neuronal protein 6 M. mulatta 99.6 245
NP_001028347.1 ceroid-lipofuscinosis, neuronal 6 M. musculus 94.1 304
NP_001005982.1 cln6a gene product D. rerio 77.9 294
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_003901157.1 PREDICTED: ceroid-lipofuscinosis neuronal protein 6 isoform 1 P. anubis 99.4 310
NP_001011888.1 CLN6 gene product C. lupus familiaris 94.5 310

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; lung; brain; testis; mixed; cervix; ovary; embryonic tissue; intestine; mammary gland; kidney; skin; pancreas; eye; muscle; larynx; placenta; bone marrow; umbilical cord; lymph; bone; blood; connective tissue; spleen; mouth; tonsil; pineal gland; prostate; thyroid; liver; bladder; adrenal gland; vascular; ascites; uterus; lymph node; thymus; heart; stomach; salivary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 15
Map position: 15q23
UniSTS entry: Chr 15 STS-W81097
UniSTS entry: Chr 15 Rnu2
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

AK124013.1 Homo sapiens cDNA FLJ42019 fis, clone SPLEN2034081 P
AK000568.1 Homo sapiens cDNA FLJ20561 fis, clone KAT11961 PA
CR457244.1 Homo sapiens full open reading frame cDNA clone RZPDo834F0912D for gene CLN6, ceroid-lipofuscinosis, neuronal 6, late infantile, variant; complete cds, incl. stopcodon P
NM_017882.2 Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant (CLN6), mRNA PA
AK027604.1 Homo sapiens cDNA FLJ14698 fis, clone NT2RP2006069 P
BC010849.1 Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:8851 IMAGE:3878776), complete cds PA
BC013130.1 Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:21605 IMAGE:4517748), complete cds PA
AK291175.1 Homo sapiens cDNA FLJ78017 complete cds, highly similar to Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA P
AK293197.1 Homo sapiens cDNA FLJ57025 complete cds, highly similar to Ceroid-lipofuscinosis neuronal protein 6 P
AK293155.1 Homo sapiens cDNA FLJ57253 complete cds, highly similar to Ceroid-lipofuscinosis neuronal protein 6 P
AK074753.1 Homo sapiens cDNA FLJ90272 fis, clone NT2RP1000050, highly similar to Ceroid-lipofuscinosis neuronal protein 6 P

EST sequences (10 of 312) [Show all sequences]

AA961857.1 Clone IMAGE:1600349 uncharacterized tissue 3' read
AA970075.1 Clone IMAGE:1581706 mixed 3' read A
AA904349.1 Clone IMAGE:1523499 mixed 3' read A
AI053873.1 Clone IMAGE:1862257 ovary 3' read A
AI075177.1 Clone IMAGE:1673662 mixed 3' read A
BX107272.1 Clone IMAGp998P01794_;_IMAGE:347376 heart
AI188201.1 Clone IMAGE:1734471 testis 3' read
AI189804.1 Clone IMAGE:1724137 placenta 3' read
AI221793.1 Clone IMAGE:1843302 mixed 3' read A
AI251205.1 Clone IMAGE:1983910 ovary 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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