> ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2 (ATP6V1C2)
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UGID:1853451     UniGene Hs.580464     Homo sapiens (human)   ATP6V1C2 Order cDNA clone, Links
ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2 (ATP6V1C2)

Human protein-coding gene ATP6V1C2. Represented by 300 ESTs from 145 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1853451 - Hs.580464]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001158118.1 PREDICTED: V-type proton ATPase subunit C 2 isoform 1 P. troglodytes 100.0 426
NP_001034451.1 V-type proton ATPase subunit C 2 isoform a H. sapiens 100.0 426
NP_598460.1 Atp6v1c2 gene product M. musculus 93.7 426
NP_001088261.1 V-type proton ATPase subunit C 1 X. laevis 67.0 381
NP_958479.1 atp6v1c1a gene product D. rerio 66.8 382
NP_477266.1 vacuolar H[+] ATPase 44kD C subunit, isoform A D. melanogaster 58.0 383
NP_001023451.1 Protein VHA-11, isoform a C. elegans 51.4 381
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_003908340.1 PREDICTED: V-type proton ATPase subunit C 2 P. anubis 96.8 380
XP_856922.1 PREDICTED: V-type proton ATPase subunit C 2 isoform 4 C. lupus familiaris 95.8 426

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: placenta; skin; ear; prostate; pineal gland; pancreas; brain; uterus; lung; pituitary gland; eye; blood; stomach; liver; testis; mixed; mammary gland; heart; kidney; thyroid; ovary; intestine; uncharacterized tissue; embryonic tissue; cervix; bone; larynx; trachea; bone marrow; vascular; ascites; adrenal gland; bladder
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
UniSTS entry: Chr 2 SGC31703 [Map Viewer]
UniSTS entry: Chr 2 RH11818 [Map Viewer]
UniSTS entry: Chr 2 RH70399 [Map Viewer]
UniSTS entry: Chr 2 RH94195
UniSTS entry: Chr 2 WI-18107 [Map Viewer]
UniSTS entry: Chr 1 D1S1361
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AK127836.1 Homo sapiens cDNA FLJ45939 fis, clone PLACE7005671 P
AK125449.1 Homo sapiens cDNA FLJ43460 fis, clone OCBBF2035823
NM_001039362.1 Homo sapiens ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2 (ATP6V1C2), transcript variant 1, mRNA PA
BC012142.1 Homo sapiens ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2, mRNA (cDNA clone MGC:20253 IMAGE:4647654), complete cds PA
AK292952.1 Homo sapiens cDNA FLJ77341 complete cds, highly similar to Homo sapiens ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C isoform 2 (ATP6V1C2), mRNA P
NM_144583.3 Homo sapiens ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2 (ATP6V1C2), transcript variant 2, mRNA PA
AY039759.1 Homo sapiens V-ATPase C2 subunit (ATP6V1C2) mRNA, complete cds P

EST sequences (10 of 300) [Show all sequences]

AA989487.1 Clone IMAGE:1606264 kidney 3' read
AA994268.1 Clone IMAGE:1625406 mixed 3' read
AA928922.1 Clone IMAGE:1567764 lung 3' read
R25366.1 Clone IMAGE:132444 placenta 5' read
AI186630.1 Clone IMAGE:1725296 placenta 3' read A
R26551.1 Clone IMAGE:132444 placenta 3' read A
AI221057.1 Clone IMAGE:1759009 placenta 3' read A
AI253191.1 Clone IMAGE:2029252 kidney 3' read PA
CB145320.1 Clone L16HLK3-19-F09 liver 5' read
CB157652.1 Clone L17N670205n1-12-E06 liver 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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