> Calsequestrin 2 (cardiac muscle) (CASQ2)
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UGID:138440     UniGene Hs.57975     Homo sapiens (human)   CASQ2 Order cDNA clone, Links
Calsequestrin 2 (cardiac muscle) (CASQ2)

Human protein-coding gene CASQ2. Represented by 186 ESTs from 65 cDNA libraries. Corresponds to reference sequence NM_001232.3. [UniGene 138440 - Hs.57975]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_513677.3 PREDICTED: calsequestrin-2 isoform 3 P. troglodytes 100.0 398
NP_001223.2 CASQ2 gene product H. sapiens 100.0 398
NP_033944.2 Casq2 gene product M. musculus 92.6 404
NP_001002682.1 casq2 gene product D. rerio 75.6 394
NP_001080227.1 calsequestrin 1 (fast-twitch, skeletal muscle) precursor X. laevis 69.5 381
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_003892500.1 PREDICTED: calsequestrin-2 isoform 1 P. anubis 99.0 399
XP_001101353.2 PREDICTED: calsequestrin-2 M. mulatta 97.1 339

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: heart; muscle; umbilical cord; brain; eye; intestine; uncharacterized tissue; liver; prostate; placenta; mouth; esophagus; testis; skin; uterus; mixed; lung; embryonic tissue; mammary gland; trachea; stomach; kidney; connective tissue; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p13.1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK129891.1 Homo sapiens cDNA FLJ26381 fis, clone HRT06737, highly similar to Calsequestrin, cardiac muscle isoform precursor P
AK129831.1 Homo sapiens cDNA FLJ26321 fis, clone HRT00385, highly similar to Homo sapiens calsequestrin 2 (cardiac muscle) (CASQ2) P
NM_001232.3 Homo sapiens calsequestrin 2 (cardiac muscle) (CASQ2), nuclear gene encoding mitochondrial protein, mRNA PA
AK225959.1 Homo sapiens mRNA for Calsequestrin, cardiac muscle isoform precursor variant, clone: FCC114E01 P
BC022288.1 Homo sapiens calsequestrin 2 (cardiac muscle), mRNA (cDNA clone MGC:22461 IMAGE:4289141), complete cds PA
AK313041.1 Homo sapiens cDNA, FLJ93514, highly similar to Homo sapiens calsequestrin 2 (cardiac muscle) (CASQ2), mRNA P
AK293595.1 Homo sapiens cDNA FLJ56025 complete cds, highly similar to Calsequestrin-2 precursor P
AK295502.1 Homo sapiens cDNA FLJ52966 complete cds, moderately similar to Calsequestrin-2 precursor P
D55655.1 Homo sapiens mRNA for cardiac calsequestrin, complete cds P

EST sequences (10 of 186) [Show all sequences]

AI039013.1 Clone IMAGE:1657301 embryonic tissue 3' read A
AI039460.1 Clone IMAGE:1658457 embryonic tissue 3' read
AI055944.1 Clone IMAGE:1659179 embryonic tissue 3' read A
AI143234.1 Clone IMAGE:1706058 heart 3' read
BX105738.1 Clone IMAGp998I07872_;_IMAGE:377166 heart
AI185764.1 Clone IMAGE:1741859 lung 3' read A
AI186951.1 Clone IMAGE:1741159 lung 3' read
AI243323.1 Clone IMAGE:1847246 mixed 3' read A
F30464.1 Clone s4000104A07 muscle
F34569.1 Clone s5000007G08 muscle


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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