> Calnexin (CANX)
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UGID:1783457     UniGene Hs.567968     Homo sapiens (human)   CANX Order cDNA clone, Links
Calnexin (CANX)

Human protein-coding gene CANX. Represented by 2341 ESTs from 553 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1783457 - Hs.567968]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001737.1 CANX gene product H. sapiens 100.0 591
XP_003311044.1 PREDICTED: calnexin P. troglodytes 99.8 626
XP_002804712.1 PREDICTED: calnexin M. mulatta 99.5 626
NP_001103969.1 Canx gene product M. musculus 96.5 590
NP_001079415.1 calnexin precursor X. laevis 88.0 613
NP_998613.1 canx gene product D. rerio 82.3 599
NP_001036767.1 calnexin 99A, isoform D D. melanogaster 63.2 600
NP_200987.1 calnexin 1 A. thaliana 61.9 485
XP_964700.2 hypothetical protein NCU09265 N. crassa 57.5 395
XP_001703664.1 predicted protein C. reinhardtii 56.1 262
NP_499176.1 Protein CNX-1 C. elegans 53.2 496
Other hits (2 of 59) [Show all]SpeciesId(%)Len(aa)
XP_003900677.1 PREDICTED: calnexin isoform 3 P. anubis 99.4 626
XP_002721349.1 PREDICTED: calnexin O. cuniculus 97.8 592

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; liver; trachea; embryonic tissue; placenta; lung; uterus; skin; mammary gland; intestine; mixed; kidney; uncharacterized tissue; pancreas; eye; prostate; connective tissue; lymph node; cervix; bone; ovary; mouth; thyroid; thymus; stomach; blood; muscle; bone marrow; bladder; adrenal gland; spleen; vascular; esophagus; pituitary gland; lymph; salivary gland; ascites; nerve; heart; parathyroid; adipose tissue; ear; pharynx; amniotic fluid; ganglia; epididymis; tonsil
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5q35
UniSTS entry: Chr 5 RH16379
UniSTS entry: Chr 5 RH44837
UniSTS entry: Chr 5 RH17758
UniSTS entry: Chr 5 SHGC-12400 [Map Viewer]
UniSTS entry: Chr 5 D5S2779
UniSTS entry: Chr 5 STS-N25670
UniSTS entry: Chr 5 SHGC-52564 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

BC042843.1 Homo sapiens calnexin, mRNA (cDNA clone MGC:17014 IMAGE:4342723), complete cds PA
AF070646.1 Homo sapiens clone 24797 mRNA sequence A
L10284.1 Homo sapiens integral membrane protein, calnexin, (IP90) mRNA, complete cds P
BC050534.1 Homo sapiens cDNA clone IMAGE:6061363, containing frame-shift errors PA
BX537700.1 Homo sapiens mRNA; cDNA DKFZp686P23239 (from clone DKFZp686P23239) A
AK130080.1 Homo sapiens cDNA FLJ26570 fis, clone LNF05710 P
AK129990.1 Homo sapiens cDNA FLJ26480 fis, clone KDN05071, highly similar to Calnexin precursor P
AJ271880.1 Homo sapiens mRNA for calnexin (CANX gene) P
NM_001024649.1 Homo sapiens calnexin (CANX), transcript variant 2, mRNA P
NM_001746.3 Homo sapiens calnexin (CANX), transcript variant 1, mRNA P
BC003552.1 Homo sapiens calnexin, mRNA (cDNA clone MGC:1196 IMAGE:3546389), complete cds PA
AK312334.1 Homo sapiens cDNA, FLJ92651, Homo sapiens calnexin (CANX), mRNA P
AK294702.1 Homo sapiens cDNA FLJ55574 complete cds, highly similar to Calnexin precursor P
AK304420.1 Homo sapiens cDNA FLJ54242 complete cds, highly similar to Calnexin precursor P
S67659.1 calnexin [human, melanoma cells, SK MEL 23, mRNA Partial, 816 nt] P
L18887.1 Human calnexin mRNA, complete cds P
M94859.1 Human calnexin mRNA, complete cds P
M98452.1 Human calnexin mRNA, complete cds P

EST sequences (10 of 2341) [Show all sequences]

R15447.1 Clone IMAGE:53083 brain 3' read A
AA974781.1 Clone IMAGE:1587886 uncharacterized tissue 3' read A
AA975946.1 Clone IMAGE:1568050 lung 3' read A
AA984889.1 Clone IMAGE:1576640 spleen 3' read A
AA988836.1 Clone IMAGE:1602045 lung 3' read A
AA911707.1 Clone IMAGE:1521063 lung 3' read P
AI023210.1 Clone IMAGE:1643426 testis 3' read A
AI023301.1 Clone IMAGE:1654572 mixed 3' read A
AI027085.1 Clone IMAGE:1649745 parathyroid 3' read
AI033565.1 Clone IMAGE:1656172 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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