Sorting nexin 31 (SNX31)

Restricted Expression:

bladder carcinoma [show more like this]

adult [show more like this]

EST Profile:

Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]

GEO Profiles:

Experimental gene expression data (Gene Expression Omnibus).

cDNA Sources:

brain; mixed; muscle; uncharacterized tissue; bladder; trachea; placenta; testis; pituitary gland

NCBI

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UGID:1783247 UniGene Hs.567758 Homo sapiens (human) SNX31

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Sorting nexin 31 (SNX31)

Human protein-coding gene SNX31. Represented by 25 ESTs from 14 cDNA libraries. EST representation biased toward bladder carcinoma; adult. Corresponds to reference sequence NM_152628.3. [UniGene 1783247 - Hs.567758]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_689841.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	SNX31 gene product	H. sapiens	100.0	439
XP_001153193.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: sorting nexin-31 isoform 2	P. troglodytes	99.5	441
NP_079988.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Snx31 gene product	M. musculus	78.8	437
NP_001086730.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	sorting nexin-31	X. laevis	54.9	142
Other hits (2 of 11) [Show all]		Species	Id(%)	Len(aa)
XP_001097760.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: sorting nexin-31	M. mulatta	95.0	439
XP_003903079.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: sorting nexin-31	P. anubis	94.5	439

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	8
Map position:	8q22.3
UniSTS entry:	Chr 8	RH45797	[Map Viewer]
UniSTS entry:	Chr 8	G59689
UniSTS entry:	Chr 8	G31444

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AK127517.1	Homo sapiens cDNA FLJ45610 fis, clone BRTHA3023929
BC031260.1	Homo sapiens sorting nexin 31, mRNA (cDNA clone MGC:39715 IMAGE:5272635), complete cds	PA
AK093906.1	Homo sapiens cDNA FLJ36587 fis, clone TRACH2013928	P
NM_152628.3	Homo sapiens sorting nexin 31 (SNX31), mRNA	PA

EST sequences (10 of 25) [Show all sequences]

BX094666.1	Clone IMAGp998I10617_;_IMAGE:279249	brain		P
AI611654.1	Clone IMAGE:2243014	uncharacterized tissue	3' read	P
BX283791.1	Clone IMAGp958M08851_;_IMAGE:3997615	bladder		P
AI867804.1	Clone IMAGE:2307979	uncharacterized tissue	3' read	P
CD106024.1	Clone IMAGE:30364278	pituitary gland	5' read	P
BX483398.1	Clone DKFZp686D04236	muscle	5' read	P
CD637915.1		uncharacterized tissue		P
CD637916.1		uncharacterized tissue		P
AW630535.1	Clone IMAGE:2969478	mixed	5' read	P
CV024731.1		mixed	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria