> Chromosome 9 open reading frame 41 (C9orf41)
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UGID:1783177     UniGene Hs.567688     Homo sapiens (human)   C9orf41 Order cDNA clone, Links
Chromosome 9 open reading frame 41 (C9orf41)

Human protein-coding gene C9orf41. Represented by 104 ESTs from 69 cDNA libraries. Corresponds to reference sequence NM_152420.1. [UniGene 1783177 - Hs.567688]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_689633.1 C9orf41 gene product H. sapiens 100.0 408
XP_528328.2 PREDICTED: UPF0586 protein C9orf41 homolog P. troglodytes 99.8 474
XP_001094584.2 PREDICTED: UPF0586 protein C9orf41 M. mulatta 99.6 475
XP_003911869.1 PREDICTED: UPF0586 protein C9orf41 homolog P. anubis 99.6 474
NP_080396.2 2410127L17Rik gene product M. musculus 96.5 399
NP_001089556.1 uncharacterized protein LOC734612 X. laevis 82.4 358
NP_001013361.1 zgc:112985 gene product D. rerio 74.4 277
NP_180775.2 N2227-like domain-containing protein A. thaliana 52.9 259
NP_569963.1 CG11596, isoform A D. melanogaster 52.6 352
XP_001691859.1 hypothetical protein CHLREDRAFT_101034 C. reinhardtii 48.7 231
NP_496829.1 Protein Y48E1C.2 C. elegans 45.7 210
Other hits (2 of 47) [Show all]SpeciesId(%)Len(aa)
XP_004004353.1 PREDICTED: UPF0586 protein C9orf41 homolog O. aries 99.3 276
XP_003122012.2 PREDICTED: UPF0586 protein C9orf41 homolog S. scrofa 99.3 413

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; mixed; lymph node; embryonic tissue; eye; uncharacterized tissue; lung; kidney; ovary; intestine; muscle; adrenal gland; bladder; vascular; skin; uterus; trachea; liver; mouth; salivary gland; thyroid; lymph; cervix; blood; prostate; nerve; bone marrow; bone; mammary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q21.13
UniSTS entry: Chr 22 REN77530
UniSTS entry: Chr 22 REN77535
UniSTS entry: Chr 22 REN77537
UniSTS entry: Chr 22 REN77532
UniSTS entry: Chr 22 stSG602705
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

BX538061.1 Homo sapiens mRNA; cDNA DKFZp686J16172 (from clone DKFZp686J16172) PA
BX647386.1 Homo sapiens mRNA; cDNA DKFZp686C13144 (from clone DKFZp686C13144) PA
BC034033.1 Homo sapiens chromosome 9 open reading frame 41, mRNA (cDNA clone MGC:24721 IMAGE:4278547), complete cds PA
AK098661.1 Homo sapiens cDNA FLJ25795 fis, clone TST07031 P
AK299691.1 Homo sapiens cDNA FLJ58856 complete cds P
NM_152420.1 Homo sapiens chromosome 9 open reading frame 41 (C9orf41), mRNA PA

EST sequences (10 of 104) [Show all sequences]

CB052768.1 Clone IMAGE:3290379 uncharacterized tissue 5' read P
AI478216.1 Clone IMAGE:2161572 kidney 3' read A
AI627846.1 Clone IMAGE:2285624 kidney 3' read A
AI686196.1 Clone IMAGE:2253512 prostate 3' read A
AI745281.1 Clone IMAGE:2363996 mixed 3' read
AI766030.1 Clone IMAGE:2385777 kidney 3' read A
BX281771.1 Clone IMAGp998L1612274_;_IMAGE:5555103 uterus P
BX332562.2 Clone CS0DC013YK20 uncharacterized tissue 5' read P
BX368597.2 Clone CS0DC013YK20 uncharacterized tissue 5' read P
BX481773.1 Clone DKFZp686J12227 muscle 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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