Isthmin 1 homolog (zebrafish) (ISM1)

Restricted Expression:

fetus [show more like this]

EST Profile:

Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]

GEO Profiles:

Experimental gene expression data (Gene Expression Omnibus).

cDNA Sources:

brain; placenta; uterus; adrenal gland; uncharacterized tissue; mammary gland; kidney; prostate; liver; trachea; lung; mixed; eye; heart; connective tissue; bone; adipose tissue

NCBI

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UGID:1841017 UniGene Hs.559353 Homo sapiens (human) ISM1

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Isthmin 1 homolog (zebrafish) (ISM1)

Human protein-coding gene ISM1. Represented by 39 ESTs from 28 cDNA libraries. EST representation biased toward fetus. Corresponds to reference sequence NM_080826.1. [UniGene 1841017 - Hs.559353]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_543016.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	ISM1 gene product	H. sapiens	100.0	463
XP_525268.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: isthmin-1	P. troglodytes	100.0	417
NP_001119962.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Ism1 gene product	M. musculus	96.0	453
NP_001082228.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	isthmin precursor	X. laevis	84.9	448
NP_001012376.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	ism1 gene product	D. rerio	76.4	460
Other hits (2 of 24) [Show all]		Species	Id(%)	Len(aa)
XP_001083877.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: isthmin-1	M. mulatta	99.0	418
XP_003905130.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: LOW QUALITY PROTEIN: isthmin-1	P. anubis	98.9	463

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	20
Map position:	20p12.1
UniSTS entry:	Chr 20	WI-15703	[Map Viewer]

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

NM_080826.1	Homo sapiens isthmin 1 homolog (zebrafish) (ISM1), mRNA	PA
BC017997.1	Homo sapiens isthmin 1 homolog (zebrafish), mRNA (cDNA clone IMAGE:4252124), partial cds	PA
AK307409.1	Homo sapiens cDNA, FLJ97357	P

EST sequences (10 of 39) [Show all sequences]

R19947.1	Clone IMAGE:34150	brain	5' read
AI082824.1	Clone IMAGE:1662419	mixed	3' read
AI191256.1	Clone IMAGE:1741710	lung	3' read
R52250.1	Clone IMAGE:154361	mammary gland	3' read
BX119679.1	Clone IMAGp998H10157_;_IMAGE:34150	brain		A
R44763.1	Clone IMAGE:34150	brain	3' read	A
AI816793.1	Clone IMAGE:2404701	kidney	3' read	A
AI886394.1	Clone IMAGE:2443611	uterus	3' read
CB989845.1	Clone IMAGE:30341200	placenta	5' read	P
CB961129.1	Clone IMAGE:30343959	placenta	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria