> Scavenger receptor cysteine rich domain containing (5 domains) (SSC5D)
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UGID:1549092     UniGene Hs.554182     Homo sapiens (human)   SSC5D Links
Scavenger receptor cysteine rich domain containing (5 domains) (SSC5D)

Human protein-coding gene SSC5D. Represented by 48 ESTs from 38 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1549092 - Hs.554182]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001138422.1 SSC5D gene product H. sapiens 100.0 1572
NP_766596.1 Ssc5d gene product M. musculus 78.0 1370
XP_001920969.3 PREDICTED: hypothetical protein LOC100147938 D. rerio 54.7 203
Other hits (2 of 21) [Show all]SpeciesId(%)Len(aa)
XP_512913.3 PREDICTED: soluble scavenger receptor cysteine-rich domain-containing protein SSC5D P. troglodytes 98.1 1020
XP_001090042.2 PREDICTED: scavenger receptor cysteine-rich domain-containing protein LOC284297-like M. mulatta 95.1 1500

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; brain; pancreas; embryonic tissue; spleen; muscle; prostate; intestine; stomach; uterus; amniotic fluid; eye; lung; heart; connective tissue; bone; adipose tissue; uncharacterized tissue; skin; testis; kidney
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19q13.42
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

BC130540.1 Homo sapiens hypothetical LOC284297, mRNA (cDNA clone IMAGE:40146571), complete cds P
BC130538.1 Homo sapiens hypothetical LOC284297, mRNA (cDNA clone IMAGE:40146569), complete cds P
AK092577.1 Homo sapiens cDNA FLJ35258 fis, clone PROST2004146 P
AF086519.1 Homo sapiens full length insert cDNA clone ZE04B05 PA
NM_001144950.1 Homo sapiens scavenger receptor cysteine rich domain containing (5 domains) (SSC5D), transcript variant 1, mRNA PA
EU699477.1 Homo sapiens scavenger receptor cysteine-rich glycoprotein shorter isoform (SSC5D) mRNA, complete cds, alternatively spliced PA
EU699476.1 Homo sapiens scavenger receptor cysteine-rich glycoprotein (SSC5D) mRNA, complete cds, alternatively spliced P
NM_001195267.1 Homo sapiens scavenger receptor cysteine rich domain containing (5 domains) (SSC5D), transcript variant 2, mRNA P

EST sequences (10 of 48) [Show all sequences]

BX094544.1 Clone IMAGp998I10822_;_IMAGE:357969 heart PA
AI270538.1 Clone IMAGE:1978889 stomach 3' read A
AI276700.1 Clone IMAGE:1878128 mixed 3' read P
AI435040.1 Clone IMAGE:2125139 mixed 3' read P
CB268361.1 adipose tissue 5' read PA
T02873.1 Clone FB14A12 brain 3' read
AW152641.1 Clone IMAGE:2624085 stomach 3' read P
AW205013.1 Clone IMAGE:2720571 mixed 3' read A
CK822214.1 Clone IMAGE:5597694 pancreas 3' read P
CK826402.1 Clone IMAGE:6129652 pancreas 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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